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Mutant Information

Mutant Name	FN2491 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2491 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17113494 A-G Homo INTERGENIC
SBS Chr1 39502854 G-T Homo INTERGENIC
SBS Chr2 10698181 G-T Hetero INTERGENIC
SBS Chr2 12270982 C-T Hetero INTERGENIC
SBS Chr2 13675453 C-T Hetero INTERGENIC
SBS Chr2 17803363 T-A Hetero INTERGENIC
SBS Chr2 19003182 T-C Hetero INTERGENIC
SBS Chr2 22083591 A-G Hetero INTERGENIC
SBS Chr2 28255013 G-C Hetero INTERGENIC
SBS Chr3 1148520 T-G Homo INTERGENIC
SBS Chr3 10982913 G-C Hetero INTERGENIC
SBS Chr3 15035650 G-A Hetero INTERGENIC
SBS Chr3 16166637 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g206100
SBS Chr3 25013674 G-A Hetero INTERGENIC
SBS Chr3 25615061 T-C Hetero INTRON
SBS Chr3 32594003 A-C Hetero INTERGENIC
SBS Chr3 32822827 C-T Hetero UTR_3_PRIME
SBS Chr4 5346313 A-G Hetero INTRON
SBS Chr4 8322429 G-A Hetero INTERGENIC
SBS Chr4 20324046 A-G Hetero INTERGENIC
SBS Chr4 23356749 C-T Homo INTERGENIC
SBS Chr4 26318146 T-C Hetero INTRON
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 10722218 C-T Hetero INTERGENIC
SBS Chr5 19510500 C-T Hetero INTERGENIC
SBS Chr5 26627023 C-T Homo INTERGENIC
SBS Chr6 12603893 C-T Hetero UTR_3_PRIME
SBS Chr6 15568406 G-C Hetero INTERGENIC
SBS Chr6 20622462 T-A Homo INTERGENIC
SBS Chr6 26962197 C-T Hetero INTERGENIC
SBS Chr7 3574068 C-G Homo INTRON
SBS Chr7 5662207 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g068900
SBS Chr7 6589968 G-A Hetero INTERGENIC
SBS Chr7 13172003 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g116500
SBS Chr7 13172004 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g116500
SBS Chr8 5590954 C-T Hetero INTERGENIC
SBS Chr8 6571365 G-T Hetero INTERGENIC
SBS Chr8 8581098 G-A Hetero INTERGENIC
SBS Chr8 11040668 A-T Hetero INTERGENIC
SBS Chr8 26966302 A-C Hetero UTR_3_PRIME
SBS Chr10 10569825 G-A Hetero INTERGENIC
SBS Chr11 9622053 G-A Hetero INTERGENIC
SBS Chr11 11875757 G-A Hetero INTERGENIC
SBS Chr11 14291272 T-C Hetero INTRON
SBS Chr11 16648054 A-G Hetero INTERGENIC
SBS Chr11 18603517 C-T Hetero INTERGENIC
SBS Chr11 25083912 A-G Hetero INTERGENIC
SBS Chr11 28504507 A-G Hetero INTERGENIC
SBS Chr12 1821622 A-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 11658160 11658314 154
Deletion Chr10 11886308 11886316 8
Deletion Chr10 12655965 12655973 8
Deletion Chr3 13128302 13128305 3
Deletion Chr7 13359427 13359433 6
Deletion Chr4 24757893 24757896 3
Deletion Chr1 25562001 25577000 14999 OsKitaake01g248100

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 1610709 1610714 4
Insertion Chr3 26842389 26842392 2
Insertion Chr8 7323137 7323139 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 588801 828222 OsKitaake03g009600
Inversion Chr3 597966 828241
Inversion Chr2 12509265 12712306 OsKitaake02g140600
Inversion Chr2 12509268 12712312 OsKitaake02g140600
Inversion Chr1 25186311 25557929 OsKitaake01g243600
Inversion Chr1 25186326 25580479 OsKitaake01g243600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17113494	A-G	Homo	INTERGENIC
SBS	Chr1	39502854	G-T	Homo	INTERGENIC
SBS	Chr2	10698181	G-T	Hetero	INTERGENIC
SBS	Chr2	12270982	C-T	Hetero	INTERGENIC
SBS	Chr2	13675453	C-T	Hetero	INTERGENIC
SBS	Chr2	17803363	T-A	Hetero	INTERGENIC
SBS	Chr2	19003182	T-C	Hetero	INTERGENIC
SBS	Chr2	22083591	A-G	Hetero	INTERGENIC
SBS	Chr2	28255013	G-C	Hetero	INTERGENIC
SBS	Chr3	1148520	T-G	Homo	INTERGENIC
SBS	Chr3	10982913	G-C	Hetero	INTERGENIC
SBS	Chr3	15035650	G-A	Hetero	INTERGENIC
SBS	Chr3	16166637	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g206100
SBS	Chr3	25013674	G-A	Hetero	INTERGENIC
SBS	Chr3	25615061	T-C	Hetero	INTRON
SBS	Chr3	32594003	A-C	Hetero	INTERGENIC
SBS	Chr3	32822827	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	5346313	A-G	Hetero	INTRON
SBS	Chr4	8322429	G-A	Hetero	INTERGENIC
SBS	Chr4	20324046	A-G	Hetero	INTERGENIC
SBS	Chr4	23356749	C-T	Homo	INTERGENIC
SBS	Chr4	26318146	T-C	Hetero	INTRON
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	10722218	C-T	Hetero	INTERGENIC
SBS	Chr5	19510500	C-T	Hetero	INTERGENIC
SBS	Chr5	26627023	C-T	Homo	INTERGENIC
SBS	Chr6	12603893	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	15568406	G-C	Hetero	INTERGENIC
SBS	Chr6	20622462	T-A	Homo	INTERGENIC
SBS	Chr6	26962197	C-T	Hetero	INTERGENIC
SBS	Chr7	3574068	C-G	Homo	INTRON
SBS	Chr7	5662207	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g068900
SBS	Chr7	6589968	G-A	Hetero	INTERGENIC
SBS	Chr7	13172003	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g116500
SBS	Chr7	13172004	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g116500
SBS	Chr8	5590954	C-T	Hetero	INTERGENIC
SBS	Chr8	6571365	G-T	Hetero	INTERGENIC
SBS	Chr8	8581098	G-A	Hetero	INTERGENIC
SBS	Chr8	11040668	A-T	Hetero	INTERGENIC
SBS	Chr8	26966302	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	10569825	G-A	Hetero	INTERGENIC
SBS	Chr11	9622053	G-A	Hetero	INTERGENIC
SBS	Chr11	11875757	G-A	Hetero	INTERGENIC
SBS	Chr11	14291272	T-C	Hetero	INTRON
SBS	Chr11	16648054	A-G	Hetero	INTERGENIC
SBS	Chr11	18603517	C-T	Hetero	INTERGENIC
SBS	Chr11	25083912	A-G	Hetero	INTERGENIC
SBS	Chr11	28504507	A-G	Hetero	INTERGENIC
SBS	Chr12	1821622	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	11658160	11658314	154
Deletion	Chr10	11886308	11886316	8
Deletion	Chr10	12655965	12655973	8
Deletion	Chr3	13128302	13128305	3
Deletion	Chr7	13359427	13359433	6
Deletion	Chr4	24757893	24757896	3
Deletion	Chr1	25562001	25577000	14999	OsKitaake01g248100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	588801	828222	OsKitaake03g009600
Inversion	Chr3	597966	828241
Inversion	Chr2	12509265	12712306	OsKitaake02g140600
Inversion	Chr2	12509268	12712312	OsKitaake02g140600
Inversion	Chr1	25186311	25557929	OsKitaake01g243600
Inversion	Chr1	25186326	25580479	OsKitaake01g243600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes