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Mutant Information

Mutant Name	FN2492 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2492 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31498570 G-A Hetero INTERGENIC
SBS Chr1 34056591 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g350500
SBS Chr1 39466700 T-C Homo INTERGENIC
SBS Chr2 7571717 T-A Homo INTERGENIC
SBS Chr2 15369784 G-T Hetero INTERGENIC
SBS Chr2 31267555 C-T Hetero INTERGENIC
SBS Chr2 35151578 C-T Hetero INTERGENIC
SBS Chr2 36375306 A-G Homo INTERGENIC
SBS Chr3 2297018 C-T Hetero INTERGENIC
SBS Chr3 23919963 C-A Hetero INTERGENIC
SBS Chr3 35821574 G-A Hetero INTERGENIC
SBS Chr4 12763426 C-T Hetero INTRON
SBS Chr4 18922263 T-A Homo INTRON
SBS Chr4 24833821 T-C Hetero INTERGENIC
SBS Chr4 25331496 C-T Hetero INTERGENIC
SBS Chr4 27813668 G-T Hetero INTERGENIC
SBS Chr4 28945434 G-T Hetero INTERGENIC
SBS Chr4 30737670 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g237200
SBS Chr5 20419346 C-T Homo INTERGENIC
SBS Chr5 28743810 A-G Hetero INTERGENIC
SBS Chr6 9812760 C-T Hetero INTERGENIC
SBS Chr6 19075054 C-T Hetero UTR_5_PRIME
SBS Chr6 19204260 A-G Hetero INTERGENIC
SBS Chr6 21941201 C-G Homo INTERGENIC
SBS Chr7 223402 G-T Hetero UTR_3_PRIME
SBS Chr7 223403 C-T Hetero UTR_3_PRIME
SBS Chr7 3306901 G-A Hetero INTERGENIC
SBS Chr7 3306907 G-T Hetero INTERGENIC
SBS Chr7 4654100 T-C Hetero INTERGENIC
SBS Chr7 21380596 C-T Hetero INTERGENIC
SBS Chr8 12412649 G-A Hetero INTRON
SBS Chr8 15774991 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g122000
SBS Chr8 16497237 G-A Hetero INTERGENIC
SBS Chr8 19098687 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 19166663 G-A Hetero INTERGENIC
SBS Chr9 357582 G-A Hetero INTERGENIC
SBS Chr9 496420 C-G Homo INTERGENIC
SBS Chr9 2873860 C-A Homo INTERGENIC
SBS Chr9 14885341 G-A Hetero INTERGENIC
SBS Chr9 15632389 A-G Hetero INTRON
SBS Chr9 16042159 G-C Hetero INTERGENIC
SBS Chr9 19024296 C-G Hetero INTRON
SBS Chr9 22334649 C-A Hetero INTERGENIC
SBS Chr10 2061996 C-T Homo INTERGENIC
SBS Chr10 6204994 G-T Hetero INTERGENIC
SBS Chr10 20629603 C-T Homo INTERGENIC
SBS Chr10 23863589 T-A Hetero UTR_3_PRIME
SBS Chr11 2008611 G-T Homo INTERGENIC
SBS Chr11 2008612 G-T Homo INTERGENIC
SBS Chr11 16599711 C-A Hetero INTERGENIC
SBS Chr11 19079634 G-A Hetero INTERGENIC
SBS Chr12 3996033 C-T Hetero INTERGENIC
SBS Chr12 13819073 T-A Homo INTERGENIC
SBS Chr12 13819074 T-A Homo INTERGENIC
SBS Chr12 19744123 T-A Hetero INTERGENIC
SBS Chr12 20698019 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g161300
SBS Chr12 22652914 T-A Hetero INTERGENIC
SBS Chr12 22847429 T-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1162411 1162414 3
Deletion Chr5 1407715 1407716 1
Deletion Chr12 2780832 2780834 2
Deletion Chr8 3217003 3217004 1
Deletion Chr7 3330627 3330628 1 OsKitaake07g042200
Deletion Chr9 4384192 4384197 5
Deletion Chr7 5556792 5556799 7
Deletion Chr12 7191850 7191851 1
Deletion Chr6 7576420 7576423 3
Deletion Chr6 8001128 8001129 1 OsKitaake06g101900
Deletion Chr3 11619249 11619251 2
Deletion Chr4 13937630 13937634 4
Deletion Chr12 16264439 16264441 2
Deletion Chr12 19133126 19133133 7
Deletion Chr3 20655146 20655147 1
Deletion Chr5 22431490 22431492 2
Deletion Chr2 32707477 32707478 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 3837732 3837735 2
Insertion Chr8 4536471 4536474 2
Insertion Chr10 1672838 1672841 2
Insertion Chr12 19123522 19123525 2
Insertion Chr10 4492991 4492994 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3278304 3305847 OsKitaake07g041300
Inversion Chr7 3278318 3305849 OsKitaake07g041300
Inversion Chr8 16712093 16712427
Inversion Chr8 16712098 16712432
Inversion Chr5 28625796 28880205 2
Inversion Chr5 28625802 28880205 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31498570	G-A	Hetero	INTERGENIC
SBS	Chr1	34056591	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g350500
SBS	Chr1	39466700	T-C	Homo	INTERGENIC
SBS	Chr2	7571717	T-A	Homo	INTERGENIC
SBS	Chr2	15369784	G-T	Hetero	INTERGENIC
SBS	Chr2	31267555	C-T	Hetero	INTERGENIC
SBS	Chr2	35151578	C-T	Hetero	INTERGENIC
SBS	Chr2	36375306	A-G	Homo	INTERGENIC
SBS	Chr3	2297018	C-T	Hetero	INTERGENIC
SBS	Chr3	23919963	C-A	Hetero	INTERGENIC
SBS	Chr3	35821574	G-A	Hetero	INTERGENIC
SBS	Chr4	12763426	C-T	Hetero	INTRON
SBS	Chr4	18922263	T-A	Homo	INTRON
SBS	Chr4	24833821	T-C	Hetero	INTERGENIC
SBS	Chr4	25331496	C-T	Hetero	INTERGENIC
SBS	Chr4	27813668	G-T	Hetero	INTERGENIC
SBS	Chr4	28945434	G-T	Hetero	INTERGENIC
SBS	Chr4	30737670	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g237200
SBS	Chr5	20419346	C-T	Homo	INTERGENIC
SBS	Chr5	28743810	A-G	Hetero	INTERGENIC
SBS	Chr6	9812760	C-T	Hetero	INTERGENIC
SBS	Chr6	19075054	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	19204260	A-G	Hetero	INTERGENIC
SBS	Chr6	21941201	C-G	Homo	INTERGENIC
SBS	Chr7	223402	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	223403	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	3306901	G-A	Hetero	INTERGENIC
SBS	Chr7	3306907	G-T	Hetero	INTERGENIC
SBS	Chr7	4654100	T-C	Hetero	INTERGENIC
SBS	Chr7	21380596	C-T	Hetero	INTERGENIC
SBS	Chr8	12412649	G-A	Hetero	INTRON
SBS	Chr8	15774991	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g122000
SBS	Chr8	16497237	G-A	Hetero	INTERGENIC
SBS	Chr8	19098687	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	19166663	G-A	Hetero	INTERGENIC
SBS	Chr9	357582	G-A	Hetero	INTERGENIC
SBS	Chr9	496420	C-G	Homo	INTERGENIC
SBS	Chr9	2873860	C-A	Homo	INTERGENIC
SBS	Chr9	14885341	G-A	Hetero	INTERGENIC
SBS	Chr9	15632389	A-G	Hetero	INTRON
SBS	Chr9	16042159	G-C	Hetero	INTERGENIC
SBS	Chr9	19024296	C-G	Hetero	INTRON
SBS	Chr9	22334649	C-A	Hetero	INTERGENIC
SBS	Chr10	2061996	C-T	Homo	INTERGENIC
SBS	Chr10	6204994	G-T	Hetero	INTERGENIC
SBS	Chr10	20629603	C-T	Homo	INTERGENIC
SBS	Chr10	23863589	T-A	Hetero	UTR_3_PRIME
SBS	Chr11	2008611	G-T	Homo	INTERGENIC
SBS	Chr11	2008612	G-T	Homo	INTERGENIC
SBS	Chr11	16599711	C-A	Hetero	INTERGENIC
SBS	Chr11	19079634	G-A	Hetero	INTERGENIC
SBS	Chr12	3996033	C-T	Hetero	INTERGENIC
SBS	Chr12	13819073	T-A	Homo	INTERGENIC
SBS	Chr12	13819074	T-A	Homo	INTERGENIC
SBS	Chr12	19744123	T-A	Hetero	INTERGENIC
SBS	Chr12	20698019	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g161300
SBS	Chr12	22652914	T-A	Hetero	INTERGENIC
SBS	Chr12	22847429	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1162411	1162414	3
Deletion	Chr5	1407715	1407716	1
Deletion	Chr12	2780832	2780834	2
Deletion	Chr8	3217003	3217004	1
Deletion	Chr7	3330627	3330628	1	OsKitaake07g042200
Deletion	Chr9	4384192	4384197	5
Deletion	Chr7	5556792	5556799	7
Deletion	Chr12	7191850	7191851	1
Deletion	Chr6	7576420	7576423	3
Deletion	Chr6	8001128	8001129	1	OsKitaake06g101900
Deletion	Chr3	11619249	11619251	2
Deletion	Chr4	13937630	13937634	4
Deletion	Chr12	16264439	16264441	2
Deletion	Chr12	19133126	19133133	7
Deletion	Chr3	20655146	20655147	1
Deletion	Chr5	22431490	22431492	2
Deletion	Chr2	32707477	32707478	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3278304	3305847	OsKitaake07g041300
Inversion	Chr7	3278318	3305849	OsKitaake07g041300
Inversion	Chr8	16712093	16712427
Inversion	Chr8	16712098	16712432
Inversion	Chr5	28625796	28880205	2
Inversion	Chr5	28625802	28880205	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes