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Mutant Information

Mutant Name	FN2493 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2493 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12682242 G-A Hetero INTERGENIC
SBS Chr1 17186775 G-T Homo INTERGENIC
SBS Chr1 28330609 T-C Hetero INTERGENIC
SBS Chr1 29825586 G-A Hetero INTRON
SBS Chr1 33117825 C-A Hetero INTERGENIC
SBS Chr1 33237772 A-G Homo INTERGENIC
SBS Chr1 40229077 T-A Hetero INTERGENIC
SBS Chr1 40229080 T-C Hetero INTERGENIC
SBS Chr2 8148381 T-C Hetero INTERGENIC
SBS Chr3 20433072 T-C Homo INTERGENIC
SBS Chr4 7348699 C-T Homo INTERGENIC
SBS Chr4 12466372 C-A Hetero INTERGENIC
SBS Chr4 18815919 G-A Hetero INTERGENIC
SBS Chr4 28166386 C-T Hetero INTERGENIC
SBS Chr4 28265395 T-A Hetero INTERGENIC
SBS Chr4 31559160 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g248400
SBS Chr4 33259224 A-G Hetero UTR_3_PRIME
SBS Chr5 14606531 C-T Hetero INTERGENIC
SBS Chr5 15422854 G-C Hetero INTERGENIC
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr7 9373727 G-T Homo INTERGENIC
SBS Chr7 27733364 G-A Hetero INTERGENIC
SBS Chr7 28824319 G-T Hetero INTRON
SBS Chr8 5206673 A-G Hetero INTERGENIC
SBS Chr9 5569147 T-C Homo INTERGENIC
SBS Chr9 9791265 T-G Hetero INTERGENIC
SBS Chr9 11657776 C-T Hetero INTERGENIC
SBS Chr10 5540106 T-A Homo INTERGENIC
SBS Chr10 6601627 G-A Homo INTERGENIC
SBS Chr11 7314178 C-T Hetero INTERGENIC
SBS Chr12 10474999 C-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1400441 1400445 4
Deletion Chr11 1751033 1751035 2
Deletion Chr10 2280563 2280564 1
Deletion Chr9 7579336 7579348 12
Deletion Chr10 10465251 10465257 6
Deletion Chr10 17139517 17139519 2
Deletion Chr6 26264912 26264927 15 OsKitaake06g234900
Deletion Chr4 29269001 29396000 126999 25
Deletion Chr3 32238001 32298000 59999 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 25661568 25661570 1
Insertion Chr3 23549922 23549925 2
Insertion Chr5 14083752 14083755 2
Insertion Chr7 6451516 6451522 5 OsKitaake07g074600
Insertion Chr9 14573562 14573567 4 OsKitaake09g099200
Insertion Chr2 19257882 19257885 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2242868 2311142 OsKitaake05g025800
Inversion Chr5 2242939 2311155 OsKitaake05g025800
Inversion Chr4 29146281 29268866
Inversion Chr4 29146289 29401172

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12682242	G-A	Hetero	INTERGENIC
SBS	Chr1	17186775	G-T	Homo	INTERGENIC
SBS	Chr1	28330609	T-C	Hetero	INTERGENIC
SBS	Chr1	29825586	G-A	Hetero	INTRON
SBS	Chr1	33117825	C-A	Hetero	INTERGENIC
SBS	Chr1	33237772	A-G	Homo	INTERGENIC
SBS	Chr1	40229077	T-A	Hetero	INTERGENIC
SBS	Chr1	40229080	T-C	Hetero	INTERGENIC
SBS	Chr2	8148381	T-C	Hetero	INTERGENIC
SBS	Chr3	20433072	T-C	Homo	INTERGENIC
SBS	Chr4	7348699	C-T	Homo	INTERGENIC
SBS	Chr4	12466372	C-A	Hetero	INTERGENIC
SBS	Chr4	18815919	G-A	Hetero	INTERGENIC
SBS	Chr4	28166386	C-T	Hetero	INTERGENIC
SBS	Chr4	28265395	T-A	Hetero	INTERGENIC
SBS	Chr4	31559160	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g248400
SBS	Chr4	33259224	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	14606531	C-T	Hetero	INTERGENIC
SBS	Chr5	15422854	G-C	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr7	9373727	G-T	Homo	INTERGENIC
SBS	Chr7	27733364	G-A	Hetero	INTERGENIC
SBS	Chr7	28824319	G-T	Hetero	INTRON
SBS	Chr8	5206673	A-G	Hetero	INTERGENIC
SBS	Chr9	5569147	T-C	Homo	INTERGENIC
SBS	Chr9	9791265	T-G	Hetero	INTERGENIC
SBS	Chr9	11657776	C-T	Hetero	INTERGENIC
SBS	Chr10	5540106	T-A	Homo	INTERGENIC
SBS	Chr10	6601627	G-A	Homo	INTERGENIC
SBS	Chr11	7314178	C-T	Hetero	INTERGENIC
SBS	Chr12	10474999	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1400441	1400445	4
Deletion	Chr11	1751033	1751035	2
Deletion	Chr10	2280563	2280564	1
Deletion	Chr9	7579336	7579348	12
Deletion	Chr10	10465251	10465257	6
Deletion	Chr10	17139517	17139519	2
Deletion	Chr6	26264912	26264927	15	OsKitaake06g234900
Deletion	Chr4	29269001	29396000	126999	25
Deletion	Chr3	32238001	32298000	59999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2242868	2311142	OsKitaake05g025800
Inversion	Chr5	2242939	2311155	OsKitaake05g025800
Inversion	Chr4	29146281	29268866
Inversion	Chr4	29146289	29401172

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes