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Mutant Information

Mutant Name	FN2495 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2495 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11502804 A-G Homo INTERGENIC
SBS Chr1 13128327 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g155500
SBS Chr1 15544149 C-T Homo INTERGENIC
SBS Chr1 24688491 A-C Hetero INTERGENIC
SBS Chr2 11039044 G-A Hetero INTERGENIC
SBS Chr2 20410956 C-T Hetero INTERGENIC
SBS Chr2 20690861 G-A Hetero INTERGENIC
SBS Chr2 31487484 G-C Homo INTERGENIC
SBS Chr3 7798555 C-T Hetero INTERGENIC
SBS Chr3 26994237 T-C Homo INTERGENIC
SBS Chr4 25882264 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 26339620 A-C Hetero INTERGENIC
SBS Chr5 1546836 C-T Hetero INTRON
SBS Chr5 5384239 C-T Homo INTERGENIC
SBS Chr5 6542754 C-T Homo INTERGENIC
SBS Chr5 6663083 G-A Hetero UTR_3_PRIME
SBS Chr5 20764037 T-G Homo INTERGENIC
SBS Chr6 3354613 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g046700
SBS Chr6 9815463 C-G Hetero INTERGENIC
SBS Chr6 9830242 T-C Homo INTERGENIC
SBS Chr6 11007155 T-C Hetero INTERGENIC
SBS Chr6 14174001 G-T Homo INTERGENIC
SBS Chr8 2502213 T-G Homo INTERGENIC
SBS Chr8 11397227 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 22159208 C-G Hetero UTR_3_PRIME
SBS Chr8 23037807 T-A Hetero INTERGENIC
SBS Chr9 2722608 T-G Homo INTERGENIC
SBS Chr10 11881092 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g070800
SBS Chr10 12185689 C-T Hetero INTERGENIC
SBS Chr10 13671882 T-A Hetero INTERGENIC
SBS Chr10 13671883 T-A Hetero INTERGENIC
SBS Chr11 1885506 G-T Hetero SYNONYMOUS_CODING
SBS Chr11 9082728 C-T Homo INTERGENIC
SBS Chr11 9965611 A-C Homo INTERGENIC
SBS Chr11 17064300 T-C Homo INTRON
SBS Chr11 19134997 A-T Hetero INTERGENIC
SBS Chr11 23559000 G-A Hetero INTERGENIC
SBS Chr12 4734599 T-A Hetero INTERGENIC
SBS Chr12 7076282 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2627178 2627183 5
Deletion Chr2 2828818 2828822 4
Deletion Chr11 9102805 9102809 4
Deletion Chr1 11485586 11485587 1
Deletion Chr11 20763001 20774000 10999 2
Deletion Chr4 21614513 21614516 3
Deletion Chr6 21711129 21711133 4
Deletion Chr6 25037001 25044000 6999 2
Deletion Chr3 31706493 31706498 5
Deletion Chr3 32910079 32910088 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20001309 20001312 2
Insertion Chr4 20202830 20202835 4
Insertion Chr10 23200010 23200015 4

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20774466 Chr2 32640797 2
Translocation Chr11 20774747 Chr2 32640813 2
Translocation Chr6 24222154 Chr4 9667007
Translocation Chr6 24222165 Chr4 9645682

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11502804	A-G	Homo	INTERGENIC
SBS	Chr1	13128327	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g155500
SBS	Chr1	15544149	C-T	Homo	INTERGENIC
SBS	Chr1	24688491	A-C	Hetero	INTERGENIC
SBS	Chr2	11039044	G-A	Hetero	INTERGENIC
SBS	Chr2	20410956	C-T	Hetero	INTERGENIC
SBS	Chr2	20690861	G-A	Hetero	INTERGENIC
SBS	Chr2	31487484	G-C	Homo	INTERGENIC
SBS	Chr3	7798555	C-T	Hetero	INTERGENIC
SBS	Chr3	26994237	T-C	Homo	INTERGENIC
SBS	Chr4	25882264	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	26339620	A-C	Hetero	INTERGENIC
SBS	Chr5	1546836	C-T	Hetero	INTRON
SBS	Chr5	5384239	C-T	Homo	INTERGENIC
SBS	Chr5	6542754	C-T	Homo	INTERGENIC
SBS	Chr5	6663083	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	20764037	T-G	Homo	INTERGENIC
SBS	Chr6	3354613	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g046700
SBS	Chr6	9815463	C-G	Hetero	INTERGENIC
SBS	Chr6	9830242	T-C	Homo	INTERGENIC
SBS	Chr6	11007155	T-C	Hetero	INTERGENIC
SBS	Chr6	14174001	G-T	Homo	INTERGENIC
SBS	Chr8	2502213	T-G	Homo	INTERGENIC
SBS	Chr8	11397227	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22159208	C-G	Hetero	UTR_3_PRIME
SBS	Chr8	23037807	T-A	Hetero	INTERGENIC
SBS	Chr9	2722608	T-G	Homo	INTERGENIC
SBS	Chr10	11881092	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g070800
SBS	Chr10	12185689	C-T	Hetero	INTERGENIC
SBS	Chr10	13671882	T-A	Hetero	INTERGENIC
SBS	Chr10	13671883	T-A	Hetero	INTERGENIC
SBS	Chr11	1885506	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	9082728	C-T	Homo	INTERGENIC
SBS	Chr11	9965611	A-C	Homo	INTERGENIC
SBS	Chr11	17064300	T-C	Homo	INTRON
SBS	Chr11	19134997	A-T	Hetero	INTERGENIC
SBS	Chr11	23559000	G-A	Hetero	INTERGENIC
SBS	Chr12	4734599	T-A	Hetero	INTERGENIC
SBS	Chr12	7076282	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2627178	2627183	5
Deletion	Chr2	2828818	2828822	4
Deletion	Chr11	9102805	9102809	4
Deletion	Chr1	11485586	11485587	1
Deletion	Chr11	20763001	20774000	10999	2
Deletion	Chr4	21614513	21614516	3
Deletion	Chr6	21711129	21711133	4
Deletion	Chr6	25037001	25044000	6999	2
Deletion	Chr3	31706493	31706498	5
Deletion	Chr3	32910079	32910088	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	20774466	Chr2	32640797	2
Translocation	Chr11	20774747	Chr2	32640813	2
Translocation	Chr6	24222154	Chr4	9667007
Translocation	Chr6	24222165	Chr4	9645682

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes