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Mutant Information

Mutant Name	FN2496 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2496 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 433036 A-C Homo INTRON
SBS Chr1 14415252 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g164100
SBS Chr1 28496007 G-A Hetero INTERGENIC
SBS Chr1 37075271 G-C Hetero INTERGENIC
SBS Chr1 40198212 A-G Homo INTRON
SBS Chr2 12371022 T-C Hetero INTERGENIC
SBS Chr3 12927186 T-G Hetero INTRON
SBS Chr3 17202799 A-T Hetero INTERGENIC
SBS Chr3 27107386 G-A Homo INTERGENIC
SBS Chr4 137945 T-A Hetero INTERGENIC
SBS Chr4 3430057 A-G Hetero INTERGENIC
SBS Chr4 11194708 C-T Hetero INTERGENIC
SBS Chr4 16874160 T-A Hetero INTRON
SBS Chr4 28751638 A-C Homo INTERGENIC
SBS Chr4 30812537 A-G Hetero UTR_3_PRIME
SBS Chr4 33979550 C-T Homo INTERGENIC
SBS Chr5 1189777 A-G Homo INTERGENIC
SBS Chr5 9950461 T-C Homo INTERGENIC
SBS Chr5 29066061 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g274800
SBS Chr6 445084 G-A Homo UTR_5_PRIME
SBS Chr6 14923239 G-A Homo INTRON
SBS Chr6 19523567 A-T Hetero INTERGENIC
SBS Chr6 29804882 C-T Hetero INTRON
SBS Chr7 6387203 A-G Hetero INTERGENIC
SBS Chr7 8309639 T-C Hetero INTERGENIC
SBS Chr7 13118461 C-G Hetero INTERGENIC
SBS Chr8 5072216 G-A Hetero INTERGENIC
SBS Chr8 16598249 G-C Hetero INTERGENIC
SBS Chr9 3994989 G-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr9 9353597 G-T Hetero INTERGENIC
SBS Chr9 14017600 C-A Hetero INTRON
SBS Chr10 4781632 G-T Hetero INTERGENIC
SBS Chr10 8466051 C-A Hetero INTERGENIC
SBS Chr10 21474433 T-C Hetero INTRON
SBS Chr11 9831322 A-T Hetero INTERGENIC
SBS Chr11 16026831 T-G Hetero INTERGENIC
SBS Chr11 16720339 G-C Hetero INTERGENIC
SBS Chr11 19420380 C-T Hetero INTERGENIC
SBS Chr11 25833857 G-A Hetero INTERGENIC
SBS Chr12 22599723 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 23457201 T-C Hetero INTERGENIC
SBS Chr12 23595431 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g189400
SBS Chr12 26410030 A-C Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 5441273 5441275 2
Deletion Chr10 6615456 6615460 4
Deletion Chr9 9315208 9315209 1
Deletion Chr12 12576001 12614000 37999 6
Deletion Chr11 14216265 14216280 15
Deletion Chr2 17083673 17083681 8
Deletion Chr3 23427951 23427953 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 26798836 26798840 3
Insertion Chr8 2510172 2510174 1
Insertion Chr9 10068067 10068069 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	433036	A-C	Homo	INTRON
SBS	Chr1	14415252	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g164100
SBS	Chr1	28496007	G-A	Hetero	INTERGENIC
SBS	Chr1	37075271	G-C	Hetero	INTERGENIC
SBS	Chr1	40198212	A-G	Homo	INTRON
SBS	Chr2	12371022	T-C	Hetero	INTERGENIC
SBS	Chr3	12927186	T-G	Hetero	INTRON
SBS	Chr3	17202799	A-T	Hetero	INTERGENIC
SBS	Chr3	27107386	G-A	Homo	INTERGENIC
SBS	Chr4	137945	T-A	Hetero	INTERGENIC
SBS	Chr4	3430057	A-G	Hetero	INTERGENIC
SBS	Chr4	11194708	C-T	Hetero	INTERGENIC
SBS	Chr4	16874160	T-A	Hetero	INTRON
SBS	Chr4	28751638	A-C	Homo	INTERGENIC
SBS	Chr4	30812537	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	33979550	C-T	Homo	INTERGENIC
SBS	Chr5	1189777	A-G	Homo	INTERGENIC
SBS	Chr5	9950461	T-C	Homo	INTERGENIC
SBS	Chr5	29066061	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g274800
SBS	Chr6	445084	G-A	Homo	UTR_5_PRIME
SBS	Chr6	14923239	G-A	Homo	INTRON
SBS	Chr6	19523567	A-T	Hetero	INTERGENIC
SBS	Chr6	29804882	C-T	Hetero	INTRON
SBS	Chr7	6387203	A-G	Hetero	INTERGENIC
SBS	Chr7	8309639	T-C	Hetero	INTERGENIC
SBS	Chr7	13118461	C-G	Hetero	INTERGENIC
SBS	Chr8	5072216	G-A	Hetero	INTERGENIC
SBS	Chr8	16598249	G-C	Hetero	INTERGENIC
SBS	Chr9	3994989	G-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Hetero	INTERGENIC
SBS	Chr9	14017600	C-A	Hetero	INTRON
SBS	Chr10	4781632	G-T	Hetero	INTERGENIC
SBS	Chr10	8466051	C-A	Hetero	INTERGENIC
SBS	Chr10	21474433	T-C	Hetero	INTRON
SBS	Chr11	9831322	A-T	Hetero	INTERGENIC
SBS	Chr11	16026831	T-G	Hetero	INTERGENIC
SBS	Chr11	16720339	G-C	Hetero	INTERGENIC
SBS	Chr11	19420380	C-T	Hetero	INTERGENIC
SBS	Chr11	25833857	G-A	Hetero	INTERGENIC
SBS	Chr12	22599723	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	23457201	T-C	Hetero	INTERGENIC
SBS	Chr12	23595431	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g189400
SBS	Chr12	26410030	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	5441273	5441275	2
Deletion	Chr10	6615456	6615460	4
Deletion	Chr9	9315208	9315209	1
Deletion	Chr12	12576001	12614000	37999	6
Deletion	Chr11	14216265	14216280	15
Deletion	Chr2	17083673	17083681	8
Deletion	Chr3	23427951	23427953	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes