Search Kitaake

Mutant Information

Mutant Name	FN2497 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2497 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6983609 C-T Hetero INTRON
SBS Chr1 10599621 C-T Hetero INTERGENIC
SBS Chr1 10713879 C-G Hetero INTERGENIC
SBS Chr1 17558949 A-G Hetero INTERGENIC
SBS Chr1 28683799 C-T Homo INTERGENIC
SBS Chr1 34644078 C-A Hetero INTRON
SBS Chr2 7974583 T-C Hetero INTERGENIC
SBS Chr2 23146274 G-A Homo INTERGENIC
SBS Chr2 23688787 T-C Hetero INTERGENIC
SBS Chr2 30455679 T-A Hetero INTERGENIC
SBS Chr3 14276462 G-A Hetero INTRON
SBS Chr3 26950276 A-C Homo INTERGENIC
SBS Chr4 11252599 G-A Hetero INTERGENIC
SBS Chr4 19337843 C-T Hetero INTERGENIC
SBS Chr4 28417024 C-T Hetero INTERGENIC
SBS Chr5 17745021 G-A Homo INTERGENIC
SBS Chr5 18862839 T-G Homo INTRON
SBS Chr6 1633103 A-G Hetero INTERGENIC
SBS Chr6 17716786 G-A Hetero INTERGENIC
SBS Chr7 767288 T-G Hetero INTERGENIC
SBS Chr7 2266183 G-T Hetero INTRON
SBS Chr7 24629485 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g219300
SBS Chr7 27054135 C-G Homo INTERGENIC
SBS Chr7 27496165 G-A Homo INTERGENIC
SBS Chr8 4072807 A-G Hetero INTERGENIC
SBS Chr8 4872354 T-G Hetero INTERGENIC
SBS Chr8 12695912 C-T Hetero INTERGENIC
SBS Chr9 6387607 G-A Hetero INTERGENIC
SBS Chr9 21718533 G-C Homo INTERGENIC
SBS Chr11 20494268 C-T Hetero INTERGENIC
SBS Chr11 20533645 G-A Hetero INTRON
SBS Chr11 20533646 T-A Hetero INTRON
SBS Chr11 20545028 A-T Hetero INTRON
SBS Chr12 10766493 G-A Hetero INTERGENIC
SBS Chr12 21681110 G-A Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2928259 2928267 8
Deletion Chr9 14822741 14822746 5
Deletion Chr10 18813385 18813386 1
Deletion Chr8 21510752 21510756 4
Deletion Chr11 22558762 22558764 2
Deletion Chr12 24949001 24989000 39999 OsKitaake12g202500
Deletion Chr6 27359011 27359016 5
Deletion Chr1 40508340 40508342 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 37589290 37589294 3
Insertion Chr8 8960664 8960673 8

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 7063734 7068349
Inversion Chr3 7068038 7361338 OsKitaake03g102600

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 29565311 Chr1 28373924 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6983609	C-T	Hetero	INTRON
SBS	Chr1	10599621	C-T	Hetero	INTERGENIC
SBS	Chr1	10713879	C-G	Hetero	INTERGENIC
SBS	Chr1	17558949	A-G	Hetero	INTERGENIC
SBS	Chr1	28683799	C-T	Homo	INTERGENIC
SBS	Chr1	34644078	C-A	Hetero	INTRON
SBS	Chr2	7974583	T-C	Hetero	INTERGENIC
SBS	Chr2	23146274	G-A	Homo	INTERGENIC
SBS	Chr2	23688787	T-C	Hetero	INTERGENIC
SBS	Chr2	30455679	T-A	Hetero	INTERGENIC
SBS	Chr3	14276462	G-A	Hetero	INTRON
SBS	Chr3	26950276	A-C	Homo	INTERGENIC
SBS	Chr4	11252599	G-A	Hetero	INTERGENIC
SBS	Chr4	19337843	C-T	Hetero	INTERGENIC
SBS	Chr4	28417024	C-T	Hetero	INTERGENIC
SBS	Chr5	17745021	G-A	Homo	INTERGENIC
SBS	Chr5	18862839	T-G	Homo	INTRON
SBS	Chr6	1633103	A-G	Hetero	INTERGENIC
SBS	Chr6	17716786	G-A	Hetero	INTERGENIC
SBS	Chr7	767288	T-G	Hetero	INTERGENIC
SBS	Chr7	2266183	G-T	Hetero	INTRON
SBS	Chr7	24629485	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g219300
SBS	Chr7	27054135	C-G	Homo	INTERGENIC
SBS	Chr7	27496165	G-A	Homo	INTERGENIC
SBS	Chr8	4072807	A-G	Hetero	INTERGENIC
SBS	Chr8	4872354	T-G	Hetero	INTERGENIC
SBS	Chr8	12695912	C-T	Hetero	INTERGENIC
SBS	Chr9	6387607	G-A	Hetero	INTERGENIC
SBS	Chr9	21718533	G-C	Homo	INTERGENIC
SBS	Chr11	20494268	C-T	Hetero	INTERGENIC
SBS	Chr11	20533645	G-A	Hetero	INTRON
SBS	Chr11	20533646	T-A	Hetero	INTRON
SBS	Chr11	20545028	A-T	Hetero	INTRON
SBS	Chr12	10766493	G-A	Hetero	INTERGENIC
SBS	Chr12	21681110	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2928259	2928267	8
Deletion	Chr9	14822741	14822746	5
Deletion	Chr10	18813385	18813386	1
Deletion	Chr8	21510752	21510756	4
Deletion	Chr11	22558762	22558764	2
Deletion	Chr12	24949001	24989000	39999	OsKitaake12g202500
Deletion	Chr6	27359011	27359016	5
Deletion	Chr1	40508340	40508342	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	7063734	7068349
Inversion	Chr3	7068038	7361338	OsKitaake03g102600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes