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Mutant Information

Mutant Name	FN2498 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2498 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7836433 C-T Hetero INTERGENIC
SBS Chr1 10248626 A-T Hetero INTERGENIC
SBS Chr1 17361420 T-C Hetero INTERGENIC
SBS Chr1 17453760 G-A Homo INTERGENIC
SBS Chr1 17453761 G-A Homo INTERGENIC
SBS Chr1 35962736 C-T Hetero INTERGENIC
SBS Chr1 37970992 T-G Hetero INTERGENIC
SBS Chr2 6075340 G-T Hetero INTERGENIC
SBS Chr2 20508685 C-T Hetero INTERGENIC
SBS Chr2 21321569 T-A Hetero INTRON
SBS Chr2 24317638 C-T Hetero INTERGENIC
SBS Chr3 363006 G-T Hetero INTERGENIC
SBS Chr4 2766110 C-G Hetero INTERGENIC
SBS Chr4 5060314 G-A Hetero INTERGENIC
SBS Chr4 23758781 A-T Hetero INTRON
SBS Chr5 9867585 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g089500
SBS Chr5 14196260 G-A Hetero INTRON
SBS Chr5 16387482 G-T Hetero INTERGENIC
SBS Chr5 17307358 T-C Hetero INTERGENIC
SBS Chr6 16214709 G-T Hetero INTERGENIC
SBS Chr7 10920301 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g103700
SBS Chr7 15043125 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g125900
SBS Chr7 24045380 C-G Hetero INTERGENIC
SBS Chr8 1190435 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g015600
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 11247522 G-A Hetero INTERGENIC
SBS Chr9 8962701 C-T Hetero INTERGENIC
SBS Chr9 10947051 C-T Homo INTERGENIC
SBS Chr9 16253937 A-T Hetero INTERGENIC
SBS Chr9 17700886 T-A Hetero INTRON
SBS Chr10 16645224 T-G Hetero INTRON
SBS Chr10 16744762 C-T Hetero INTERGENIC
SBS Chr10 16744763 C-A Hetero INTERGENIC
SBS Chr10 22585540 A-G Hetero UTR_5_PRIME
SBS Chr11 3335891 A-T Hetero INTERGENIC
SBS Chr11 15378674 C-T Hetero INTERGENIC
SBS Chr11 19760599 A-T Hetero INTERGENIC
SBS Chr11 26438255 C-G Hetero INTERGENIC
SBS Chr12 2569024 T-A Homo INTERGENIC
SBS Chr12 2756768 G-A Homo UTR_5_PRIME
SBS Chr12 4417816 C-A Hetero INTERGENIC
SBS Chr12 5610374 G-C Hetero INTERGENIC
SBS Chr12 7251175 T-C Hetero INTERGENIC
SBS Chr12 9905793 T-C Hetero INTERGENIC
SBS Chr12 16789250 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1008072 1008076 4
Deletion Chr8 5296404 5296411 7
Deletion Chr11 8710001 8865000 154999 11
Deletion Chr6 8965084 8965092 8
Deletion Chr7 10421811 10421814 3
Deletion Chr7 14995513 14995520 7
Deletion Chr1 22650813 22650817 4
Deletion Chr12 24217352 24217354 2
Deletion Chr8 28701495 28701497 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34031096 34031098 1
Insertion Chr6 7793675 7793678 2
Insertion Chr8 27257524 27257530 5
Insertion Chr9 5713538 5713541 2
Insertion Chr12 4052293 4052296 2
Insertion Chr3 4090435 4090437 1
Insertion Chr4 2728023 2728026 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 19159596 19194246

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7836433	C-T	Hetero	INTERGENIC
SBS	Chr1	10248626	A-T	Hetero	INTERGENIC
SBS	Chr1	17361420	T-C	Hetero	INTERGENIC
SBS	Chr1	17453760	G-A	Homo	INTERGENIC
SBS	Chr1	17453761	G-A	Homo	INTERGENIC
SBS	Chr1	35962736	C-T	Hetero	INTERGENIC
SBS	Chr1	37970992	T-G	Hetero	INTERGENIC
SBS	Chr2	6075340	G-T	Hetero	INTERGENIC
SBS	Chr2	20508685	C-T	Hetero	INTERGENIC
SBS	Chr2	21321569	T-A	Hetero	INTRON
SBS	Chr2	24317638	C-T	Hetero	INTERGENIC
SBS	Chr3	363006	G-T	Hetero	INTERGENIC
SBS	Chr4	2766110	C-G	Hetero	INTERGENIC
SBS	Chr4	5060314	G-A	Hetero	INTERGENIC
SBS	Chr4	23758781	A-T	Hetero	INTRON
SBS	Chr5	9867585	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g089500
SBS	Chr5	14196260	G-A	Hetero	INTRON
SBS	Chr5	16387482	G-T	Hetero	INTERGENIC
SBS	Chr5	17307358	T-C	Hetero	INTERGENIC
SBS	Chr6	16214709	G-T	Hetero	INTERGENIC
SBS	Chr7	10920301	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g103700
SBS	Chr7	15043125	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g125900
SBS	Chr7	24045380	C-G	Hetero	INTERGENIC
SBS	Chr8	1190435	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g015600
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	11247522	G-A	Hetero	INTERGENIC
SBS	Chr9	8962701	C-T	Hetero	INTERGENIC
SBS	Chr9	10947051	C-T	Homo	INTERGENIC
SBS	Chr9	16253937	A-T	Hetero	INTERGENIC
SBS	Chr9	17700886	T-A	Hetero	INTRON
SBS	Chr10	16645224	T-G	Hetero	INTRON
SBS	Chr10	16744762	C-T	Hetero	INTERGENIC
SBS	Chr10	16744763	C-A	Hetero	INTERGENIC
SBS	Chr10	22585540	A-G	Hetero	UTR_5_PRIME
SBS	Chr11	3335891	A-T	Hetero	INTERGENIC
SBS	Chr11	15378674	C-T	Hetero	INTERGENIC
SBS	Chr11	19760599	A-T	Hetero	INTERGENIC
SBS	Chr11	26438255	C-G	Hetero	INTERGENIC
SBS	Chr12	2569024	T-A	Homo	INTERGENIC
SBS	Chr12	2756768	G-A	Homo	UTR_5_PRIME
SBS	Chr12	4417816	C-A	Hetero	INTERGENIC
SBS	Chr12	5610374	G-C	Hetero	INTERGENIC
SBS	Chr12	7251175	T-C	Hetero	INTERGENIC
SBS	Chr12	9905793	T-C	Hetero	INTERGENIC
SBS	Chr12	16789250	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1008072	1008076	4
Deletion	Chr8	5296404	5296411	7
Deletion	Chr11	8710001	8865000	154999	11
Deletion	Chr6	8965084	8965092	8
Deletion	Chr7	10421811	10421814	3
Deletion	Chr7	14995513	14995520	7
Deletion	Chr1	22650813	22650817	4
Deletion	Chr12	24217352	24217354	2
Deletion	Chr8	28701495	28701497	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	19159596	19194246

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes