Search Kitaake

Mutant Information

Mutant Name	FN2529-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2529-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32358522 T-C Homo INTERGENIC
SBS Chr1 39830127 T-A Homo INTERGENIC
SBS Chr2 1576608 T-A Hetero INTERGENIC
SBS Chr2 1576609 T-A Hetero INTERGENIC
SBS Chr2 11228379 C-T Hetero INTERGENIC
SBS Chr2 13922195 C-A Hetero INTERGENIC
SBS Chr2 15310717 G-C Homo INTERGENIC
SBS Chr2 20927483 G-A Homo INTERGENIC
SBS Chr2 20927485 A-G Homo INTERGENIC
SBS Chr2 21903355 T-C Hetero INTERGENIC
SBS Chr3 1232144 T-A Hetero INTRON
SBS Chr3 7793643 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g108000
SBS Chr3 16546632 C-T Hetero INTERGENIC
SBS Chr3 31526714 A-G Hetero INTERGENIC
SBS Chr3 31566828 A-C Homo INTERGENIC
SBS Chr3 34571537 C-T Homo INTRON
SBS Chr4 6428838 G-A Hetero INTERGENIC
SBS Chr4 17786578 A-T Hetero INTERGENIC
SBS Chr4 24463835 G-A Homo INTERGENIC
SBS Chr4 29004963 T-C Homo INTERGENIC
SBS Chr4 32112126 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g255250
SBS Chr5 10802755 C-T Hetero INTERGENIC
SBS Chr5 25931169 G-A Homo INTERGENIC
SBS Chr6 6836238 C-A Hetero INTERGENIC
SBS Chr6 15101323 C-A Homo INTERGENIC
SBS Chr6 25806652 C-A Homo INTERGENIC
SBS Chr6 26144905 G-C Hetero INTERGENIC
SBS Chr7 13478903 A-C Hetero INTERGENIC
SBS Chr7 16574300 G-A Hetero INTERGENIC
SBS Chr8 9854181 G-A Homo INTERGENIC
SBS Chr9 999574 C-A Hetero INTERGENIC
SBS Chr9 10921761 G-A Hetero INTERGENIC
SBS Chr9 13107429 T-C Hetero INTERGENIC
SBS Chr10 786755 A-T Hetero INTERGENIC
SBS Chr10 23673380 G-A Hetero INTERGENIC
SBS Chr11 983161 T-C Hetero INTERGENIC
SBS Chr11 13621676 A-C Hetero INTERGENIC
SBS Chr11 18715164 C-T Homo INTERGENIC
SBS Chr11 19987591 A-G Homo INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3022878 3022883 5 OsKitaake03g042600
Deletion Chr9 8779925 8780016 91
Deletion Chr10 13391073 13391075 2
Deletion Chr8 13760019 13760025 6
Deletion Chr12 21529986 21529988 2
Deletion Chr8 28073683 28073685 2
Deletion Chr5 29059403 29059404 1 OsKitaake05g274700
Deletion Chr5 29085290 29085293 3
Deletion Chr5 29717469 29717476 7
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr3 32846803 32846804 1 OsKitaake03g349100
Deletion Chr4 35176842 35176843 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4060072 4060075 2
Insertion Chr3 18173266 18173271 4
Insertion Chr4 21217896 21217898 1
Insertion Chr5 14569030 14569033 2
Insertion Chr10 11330784 11330787 2
Insertion Chr7 11992111 11992113 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 13185175 13648693
Inversion Chr5 20071330 20087224
Inversion Chr5 20071344 20087231

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 256601 Chr10 788339
Translocation Chr11 256607 Chr10 921111 OsKitaake10g006500
Translocation Chr11 26611586 Chr7 4350851
Translocation Chr11 26682811 Chr7 24623306

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32358522	T-C	Homo	INTERGENIC
SBS	Chr1	39830127	T-A	Homo	INTERGENIC
SBS	Chr2	1576608	T-A	Hetero	INTERGENIC
SBS	Chr2	1576609	T-A	Hetero	INTERGENIC
SBS	Chr2	11228379	C-T	Hetero	INTERGENIC
SBS	Chr2	13922195	C-A	Hetero	INTERGENIC
SBS	Chr2	15310717	G-C	Homo	INTERGENIC
SBS	Chr2	20927483	G-A	Homo	INTERGENIC
SBS	Chr2	20927485	A-G	Homo	INTERGENIC
SBS	Chr2	21903355	T-C	Hetero	INTERGENIC
SBS	Chr3	1232144	T-A	Hetero	INTRON
SBS	Chr3	7793643	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g108000
SBS	Chr3	16546632	C-T	Hetero	INTERGENIC
SBS	Chr3	31526714	A-G	Hetero	INTERGENIC
SBS	Chr3	31566828	A-C	Homo	INTERGENIC
SBS	Chr3	34571537	C-T	Homo	INTRON
SBS	Chr4	6428838	G-A	Hetero	INTERGENIC
SBS	Chr4	17786578	A-T	Hetero	INTERGENIC
SBS	Chr4	24463835	G-A	Homo	INTERGENIC
SBS	Chr4	29004963	T-C	Homo	INTERGENIC
SBS	Chr4	32112126	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g255250
SBS	Chr5	10802755	C-T	Hetero	INTERGENIC
SBS	Chr5	25931169	G-A	Homo	INTERGENIC
SBS	Chr6	6836238	C-A	Hetero	INTERGENIC
SBS	Chr6	15101323	C-A	Homo	INTERGENIC
SBS	Chr6	25806652	C-A	Homo	INTERGENIC
SBS	Chr6	26144905	G-C	Hetero	INTERGENIC
SBS	Chr7	13478903	A-C	Hetero	INTERGENIC
SBS	Chr7	16574300	G-A	Hetero	INTERGENIC
SBS	Chr8	9854181	G-A	Homo	INTERGENIC
SBS	Chr9	999574	C-A	Hetero	INTERGENIC
SBS	Chr9	10921761	G-A	Hetero	INTERGENIC
SBS	Chr9	13107429	T-C	Hetero	INTERGENIC
SBS	Chr10	786755	A-T	Hetero	INTERGENIC
SBS	Chr10	23673380	G-A	Hetero	INTERGENIC
SBS	Chr11	983161	T-C	Hetero	INTERGENIC
SBS	Chr11	13621676	A-C	Hetero	INTERGENIC
SBS	Chr11	18715164	C-T	Homo	INTERGENIC
SBS	Chr11	19987591	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3022878	3022883	5	OsKitaake03g042600
Deletion	Chr9	8779925	8780016	91
Deletion	Chr10	13391073	13391075	2
Deletion	Chr8	13760019	13760025	6
Deletion	Chr12	21529986	21529988	2
Deletion	Chr8	28073683	28073685	2
Deletion	Chr5	29059403	29059404	1	OsKitaake05g274700
Deletion	Chr5	29085290	29085293	3
Deletion	Chr5	29717469	29717476	7
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr3	32846803	32846804	1	OsKitaake03g349100
Deletion	Chr4	35176842	35176843	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13185175	13648693
Inversion	Chr5	20071330	20087224
Inversion	Chr5	20071344	20087231

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes