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Mutant Information

Mutant Name	FN2531-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2531-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9515934 G-C Hetero INTERGENIC
SBS Chr1 14265066 T-A Homo INTRON
SBS Chr1 18258961 T-C Hetero INTERGENIC
SBS Chr1 19839245 G-T Hetero SYNONYMOUS_CODING
SBS Chr1 22320032 C-T Hetero INTERGENIC
SBS Chr1 43518539 A-T Hetero INTERGENIC
SBS Chr2 26725941 C-T Hetero INTERGENIC
SBS Chr2 28783054 G-A Hetero INTERGENIC
SBS Chr2 32109737 T-G Hetero INTERGENIC
SBS Chr2 32633056 A-T Hetero INTRON
SBS Chr2 36484863 T-C Hetero INTERGENIC
SBS Chr3 3173552 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g044700
SBS Chr3 3173553 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g044700
SBS Chr3 5113587 C-T Hetero UTR_3_PRIME
SBS Chr3 19422544 C-G Hetero INTERGENIC
SBS Chr3 25263151 C-T Homo INTERGENIC
SBS Chr4 3033701 T-C Hetero INTERGENIC
SBS Chr4 10935347 G-A Homo INTERGENIC
SBS Chr4 19292197 G-A Hetero INTERGENIC
SBS Chr4 26222247 G-T Hetero INTERGENIC
SBS Chr4 30624697 G-A Hetero INTERGENIC
SBS Chr4 34748594 C-A Hetero INTERGENIC
SBS Chr5 6916925 C-T Hetero INTERGENIC
SBS Chr5 18099898 T-A Hetero INTRON
SBS Chr5 20120920 G-C Hetero INTERGENIC
SBS Chr5 23691477 A-T Homo INTERGENIC
SBS Chr6 5702169 T-C Hetero UTR_3_PRIME
SBS Chr6 7987138 A-G Hetero INTERGENIC
SBS Chr6 11247618 A-G Hetero INTERGENIC
SBS Chr6 20074229 C-T Hetero INTERGENIC
SBS Chr6 22903424 G-A Hetero INTERGENIC
SBS Chr6 28461327 G-A Hetero INTERGENIC
SBS Chr7 4650775 C-G Homo INTERGENIC
SBS Chr7 20870837 T-A Hetero INTERGENIC
SBS Chr7 23239722 T-C Hetero INTRON
SBS Chr7 26762474 G-T Homo INTERGENIC
SBS Chr8 5545971 T-A Hetero INTERGENIC
SBS Chr8 9939830 C-G Hetero INTERGENIC
SBS Chr9 1492927 G-A Hetero INTERGENIC
SBS Chr9 6259084 T-C Hetero INTERGENIC
SBS Chr10 6363242 T-A Hetero INTERGENIC
SBS Chr10 9116061 C-A Hetero INTERGENIC
SBS Chr11 17545589 T-C Hetero INTRON
SBS Chr11 19040805 G-A Hetero INTERGENIC
SBS Chr12 4760248 T-A Hetero UTR_3_PRIME
SBS Chr12 4760249 T-A Hetero UTR_3_PRIME
SBS Chr12 6745398 C-T Hetero INTERGENIC
SBS Chr12 9922103 C-A Hetero INTERGENIC
SBS Chr12 12987193 A-T Hetero INTERGENIC
SBS Chr12 15911477 C-T Hetero INTERGENIC
SBS Chr12 20132476 T-C Hetero INTERGENIC
SBS Chr12 22964060 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2601556 2601563 7
Deletion Chr1 5873001 6377000 503999 59
Deletion Chr11 8859794 8859795 1
Deletion Chr10 10989313 10989323 10
Deletion Chr8 13246904 13247060 156
Deletion Chr1 13648001 14076000 427999 30
Deletion Chr3 15208091 15208092 1
Deletion Chr2 15541481 15541491 10
Deletion Chr11 16079226 16079241 15
Deletion Chr6 21343253 21343274 21
Deletion Chr10 21352024 21352025 1
Deletion Chr3 25116250 25116251 1
Deletion Chr2 26421492 26421506 14 OsKitaake02g263700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 32109724 32109727 2
Insertion Chr7 6823656 6823658 1
Insertion Chr9 20920689 20920693 3
Insertion Chr10 20239395 20239399 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9515934	G-C	Hetero	INTERGENIC
SBS	Chr1	14265066	T-A	Homo	INTRON
SBS	Chr1	18258961	T-C	Hetero	INTERGENIC
SBS	Chr1	19839245	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	22320032	C-T	Hetero	INTERGENIC
SBS	Chr1	43518539	A-T	Hetero	INTERGENIC
SBS	Chr2	26725941	C-T	Hetero	INTERGENIC
SBS	Chr2	28783054	G-A	Hetero	INTERGENIC
SBS	Chr2	32109737	T-G	Hetero	INTERGENIC
SBS	Chr2	32633056	A-T	Hetero	INTRON
SBS	Chr2	36484863	T-C	Hetero	INTERGENIC
SBS	Chr3	3173552	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g044700
SBS	Chr3	3173553	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g044700
SBS	Chr3	5113587	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	19422544	C-G	Hetero	INTERGENIC
SBS	Chr3	25263151	C-T	Homo	INTERGENIC
SBS	Chr4	3033701	T-C	Hetero	INTERGENIC
SBS	Chr4	10935347	G-A	Homo	INTERGENIC
SBS	Chr4	19292197	G-A	Hetero	INTERGENIC
SBS	Chr4	26222247	G-T	Hetero	INTERGENIC
SBS	Chr4	30624697	G-A	Hetero	INTERGENIC
SBS	Chr4	34748594	C-A	Hetero	INTERGENIC
SBS	Chr5	6916925	C-T	Hetero	INTERGENIC
SBS	Chr5	18099898	T-A	Hetero	INTRON
SBS	Chr5	20120920	G-C	Hetero	INTERGENIC
SBS	Chr5	23691477	A-T	Homo	INTERGENIC
SBS	Chr6	5702169	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	7987138	A-G	Hetero	INTERGENIC
SBS	Chr6	11247618	A-G	Hetero	INTERGENIC
SBS	Chr6	20074229	C-T	Hetero	INTERGENIC
SBS	Chr6	22903424	G-A	Hetero	INTERGENIC
SBS	Chr6	28461327	G-A	Hetero	INTERGENIC
SBS	Chr7	4650775	C-G	Homo	INTERGENIC
SBS	Chr7	20870837	T-A	Hetero	INTERGENIC
SBS	Chr7	23239722	T-C	Hetero	INTRON
SBS	Chr7	26762474	G-T	Homo	INTERGENIC
SBS	Chr8	5545971	T-A	Hetero	INTERGENIC
SBS	Chr8	9939830	C-G	Hetero	INTERGENIC
SBS	Chr9	1492927	G-A	Hetero	INTERGENIC
SBS	Chr9	6259084	T-C	Hetero	INTERGENIC
SBS	Chr10	6363242	T-A	Hetero	INTERGENIC
SBS	Chr10	9116061	C-A	Hetero	INTERGENIC
SBS	Chr11	17545589	T-C	Hetero	INTRON
SBS	Chr11	19040805	G-A	Hetero	INTERGENIC
SBS	Chr12	4760248	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	4760249	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	6745398	C-T	Hetero	INTERGENIC
SBS	Chr12	9922103	C-A	Hetero	INTERGENIC
SBS	Chr12	12987193	A-T	Hetero	INTERGENIC
SBS	Chr12	15911477	C-T	Hetero	INTERGENIC
SBS	Chr12	20132476	T-C	Hetero	INTERGENIC
SBS	Chr12	22964060	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2601556	2601563	7
Deletion	Chr1	5873001	6377000	503999	59
Deletion	Chr11	8859794	8859795	1
Deletion	Chr10	10989313	10989323	10
Deletion	Chr8	13246904	13247060	156
Deletion	Chr1	13648001	14076000	427999	30
Deletion	Chr3	15208091	15208092	1
Deletion	Chr2	15541481	15541491	10
Deletion	Chr11	16079226	16079241	15
Deletion	Chr6	21343253	21343274	21
Deletion	Chr10	21352024	21352025	1
Deletion	Chr3	25116250	25116251	1
Deletion	Chr2	26421492	26421506	14	OsKitaake02g263700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes