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Mutant Information

Mutant Name	FN2532-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2532-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2744301 T-C Hetero INTERGENIC
SBS Chr1 4679169 T-A Homo UTR_3_PRIME
SBS Chr1 13965464 C-T Hetero INTERGENIC
SBS Chr1 15573808 G-A Homo INTERGENIC
SBS Chr1 21713596 T-G Homo INTERGENIC
SBS Chr1 36626687 T-C Hetero INTERGENIC
SBS Chr2 21514076 T-C Hetero INTERGENIC
SBS Chr2 25670079 A-G Hetero INTERGENIC
SBS Chr2 32230345 G-T Hetero INTERGENIC
SBS Chr2 32230346 C-G Hetero INTERGENIC
SBS Chr2 33241945 G-A Hetero INTERGENIC
SBS Chr3 1941061 G-A Hetero INTERGENIC
SBS Chr3 8001622 C-A Homo INTRON
SBS Chr3 12181215 G-A Hetero INTERGENIC
SBS Chr3 17775805 C-T Hetero INTERGENIC
SBS Chr3 18789710 C-T Homo INTERGENIC
SBS Chr3 25363571 G-T Hetero INTERGENIC
SBS Chr3 30469007 T-A Hetero INTERGENIC
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr3 36650388 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 36650390 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g407900
SBS Chr4 2789243 C-G Homo INTERGENIC
SBS Chr4 4582320 C-T Hetero INTERGENIC
SBS Chr4 8508299 G-T Homo INTERGENIC
SBS Chr4 13604720 T-C Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr4 32135442 C-T Homo INTERGENIC
SBS Chr5 5213382 T-C Hetero UTR_3_PRIME
SBS Chr5 12551586 T-C Hetero INTERGENIC
SBS Chr5 13026150 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 23632734 G-T Hetero INTERGENIC
SBS Chr6 7037314 C-G Homo INTERGENIC
SBS Chr7 11096435 G-T Hetero INTRON
SBS Chr8 7158482 G-T Hetero INTERGENIC
SBS Chr8 7663512 A-G Hetero INTERGENIC
SBS Chr8 13581636 G-A Hetero INTERGENIC
SBS Chr8 13714206 G-A Hetero INTERGENIC
SBS Chr8 18095526 A-T Hetero INTERGENIC
SBS Chr8 22254479 T-C Hetero INTERGENIC
SBS Chr8 25113699 C-G Hetero INTERGENIC
SBS Chr9 5258536 G-A Hetero INTERGENIC
SBS Chr9 6427713 C-G Hetero INTERGENIC
SBS Chr9 6482321 G-A Hetero INTERGENIC
SBS Chr9 10952531 C-A Hetero INTERGENIC
SBS Chr10 4719038 A-G Homo INTERGENIC
SBS Chr10 7378694 C-A Hetero INTRON
SBS Chr10 17368320 C-A Hetero INTERGENIC
SBS Chr10 19771690 A-T Homo NON_SYNONYMOUS_CODING OsKitaake10g147000
SBS Chr10 20460691 A-G Homo INTERGENIC
SBS Chr10 20681950 G-A Homo INTERGENIC
SBS Chr10 21153841 G-A Hetero INTERGENIC
SBS Chr11 662439 A-G Hetero INTERGENIC
SBS Chr11 9344809 G-A Hetero INTERGENIC
SBS Chr11 17840154 C-A Hetero INTERGENIC
SBS Chr12 592023 C-A Hetero UTR_5_PRIME
SBS Chr12 2250975 T-A Hetero INTRON
SBS Chr12 9844614 A-G Hetero INTRON
SBS Chr12 17094153 C-T Hetero INTERGENIC
SBS Chr12 19312034 C-T Homo INTERGENIC
SBS Chr12 19821100 T-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 148229 148233 4
Deletion Chr2 362131 362133 2
Deletion Chr3 1797546 1797547 1 OsKitaake03g025600
Deletion Chr10 3434733 3434736 3
Deletion Chr6 4338382 4338384 2
Deletion Chr11 4482001 4575000 92999 6
Deletion Chr12 4577080 4577091 11
Deletion Chr11 6483922 6483925 3
Deletion Chr1 7590569 7590570 1
Deletion Chr6 14108912 14108914 2
Deletion Chr10 15594299 15594300 1
Deletion Chr5 16358864 16358866 2
Deletion Chr3 16736133 16736135 2
Deletion Chr3 17401694 17401696 2
Deletion Chr8 21161354 21161359 5
Deletion Chr2 25751801 25751802 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19776380 19776387 6
Insertion Chr3 12015158 12015160 1
Insertion Chr12 24231944 24231946 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18464558 18594056
Inversion Chr10 18464582 18591681
Inversion Chr1 31905262 32295887 2
Inversion Chr1 31905274 32295888 2
Inversion Chr3 32866564 33003136
Inversion Chr3 32866572 33003150

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2744301	T-C	Hetero	INTERGENIC
SBS	Chr1	4679169	T-A	Homo	UTR_3_PRIME
SBS	Chr1	13965464	C-T	Hetero	INTERGENIC
SBS	Chr1	15573808	G-A	Homo	INTERGENIC
SBS	Chr1	21713596	T-G	Homo	INTERGENIC
SBS	Chr1	36626687	T-C	Hetero	INTERGENIC
SBS	Chr2	21514076	T-C	Hetero	INTERGENIC
SBS	Chr2	25670079	A-G	Hetero	INTERGENIC
SBS	Chr2	32230345	G-T	Hetero	INTERGENIC
SBS	Chr2	32230346	C-G	Hetero	INTERGENIC
SBS	Chr2	33241945	G-A	Hetero	INTERGENIC
SBS	Chr3	1941061	G-A	Hetero	INTERGENIC
SBS	Chr3	8001622	C-A	Homo	INTRON
SBS	Chr3	12181215	G-A	Hetero	INTERGENIC
SBS	Chr3	17775805	C-T	Hetero	INTERGENIC
SBS	Chr3	18789710	C-T	Homo	INTERGENIC
SBS	Chr3	25363571	G-T	Hetero	INTERGENIC
SBS	Chr3	30469007	T-A	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr3	36650388	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	36650390	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g407900
SBS	Chr4	2789243	C-G	Homo	INTERGENIC
SBS	Chr4	4582320	C-T	Hetero	INTERGENIC
SBS	Chr4	8508299	G-T	Homo	INTERGENIC
SBS	Chr4	13604720	T-C	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr4	32135442	C-T	Homo	INTERGENIC
SBS	Chr5	5213382	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	12551586	T-C	Hetero	INTERGENIC
SBS	Chr5	13026150	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23632734	G-T	Hetero	INTERGENIC
SBS	Chr6	7037314	C-G	Homo	INTERGENIC
SBS	Chr7	11096435	G-T	Hetero	INTRON
SBS	Chr8	7158482	G-T	Hetero	INTERGENIC
SBS	Chr8	7663512	A-G	Hetero	INTERGENIC
SBS	Chr8	13581636	G-A	Hetero	INTERGENIC
SBS	Chr8	13714206	G-A	Hetero	INTERGENIC
SBS	Chr8	18095526	A-T	Hetero	INTERGENIC
SBS	Chr8	22254479	T-C	Hetero	INTERGENIC
SBS	Chr8	25113699	C-G	Hetero	INTERGENIC
SBS	Chr9	5258536	G-A	Hetero	INTERGENIC
SBS	Chr9	6427713	C-G	Hetero	INTERGENIC
SBS	Chr9	6482321	G-A	Hetero	INTERGENIC
SBS	Chr9	10952531	C-A	Hetero	INTERGENIC
SBS	Chr10	4719038	A-G	Homo	INTERGENIC
SBS	Chr10	7378694	C-A	Hetero	INTRON
SBS	Chr10	17368320	C-A	Hetero	INTERGENIC
SBS	Chr10	19771690	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g147000
SBS	Chr10	20460691	A-G	Homo	INTERGENIC
SBS	Chr10	20681950	G-A	Homo	INTERGENIC
SBS	Chr10	21153841	G-A	Hetero	INTERGENIC
SBS	Chr11	662439	A-G	Hetero	INTERGENIC
SBS	Chr11	9344809	G-A	Hetero	INTERGENIC
SBS	Chr11	17840154	C-A	Hetero	INTERGENIC
SBS	Chr12	592023	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	2250975	T-A	Hetero	INTRON
SBS	Chr12	9844614	A-G	Hetero	INTRON
SBS	Chr12	17094153	C-T	Hetero	INTERGENIC
SBS	Chr12	19312034	C-T	Homo	INTERGENIC
SBS	Chr12	19821100	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	148229	148233	4
Deletion	Chr2	362131	362133	2
Deletion	Chr3	1797546	1797547	1	OsKitaake03g025600
Deletion	Chr10	3434733	3434736	3
Deletion	Chr6	4338382	4338384	2
Deletion	Chr11	4482001	4575000	92999	6
Deletion	Chr12	4577080	4577091	11
Deletion	Chr11	6483922	6483925	3
Deletion	Chr1	7590569	7590570	1
Deletion	Chr6	14108912	14108914	2
Deletion	Chr10	15594299	15594300	1
Deletion	Chr5	16358864	16358866	2
Deletion	Chr3	16736133	16736135	2
Deletion	Chr3	17401694	17401696	2
Deletion	Chr8	21161354	21161359	5
Deletion	Chr2	25751801	25751802	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18464558	18594056
Inversion	Chr10	18464582	18591681
Inversion	Chr1	31905262	32295887	2
Inversion	Chr1	31905274	32295888	2
Inversion	Chr3	32866564	33003136
Inversion	Chr3	32866572	33003150

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes