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Mutant Information

Mutant Name	FN2533-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2533-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8165253 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 11066937 T-C Hetero INTERGENIC
SBS Chr1 12334218 C-A Hetero INTERGENIC
SBS Chr1 22956883 C-T Hetero INTERGENIC
SBS Chr1 42361033 G-C Hetero INTRON
SBS Chr2 3684095 G-A Hetero INTERGENIC
SBS Chr2 3979792 C-A Hetero INTERGENIC
SBS Chr2 5855739 C-T Hetero INTERGENIC
SBS Chr2 8563347 C-T Hetero INTERGENIC
SBS Chr2 23490059 C-T Hetero INTERGENIC
SBS Chr3 4264165 A-T Hetero INTRON
SBS Chr3 5145554 C-T Hetero INTERGENIC
SBS Chr3 8252536 T-C Homo INTERGENIC
SBS Chr3 14230002 C-A Homo INTERGENIC
SBS Chr3 14230004 T-C Homo INTERGENIC
SBS Chr3 18567240 T-C Homo INTRON
SBS Chr3 33004105 T-C Hetero INTERGENIC
SBS Chr3 33576808 C-A Hetero INTERGENIC
SBS Chr3 35745274 C-T Hetero INTERGENIC
SBS Chr4 3983458 T-C Hetero INTERGENIC
SBS Chr6 15303589 C-T Hetero INTERGENIC
SBS Chr6 27807324 T-A Hetero INTERGENIC
SBS Chr7 13420530 T-C Hetero UTR_3_PRIME
SBS Chr7 16508878 A-C Hetero INTERGENIC
SBS Chr7 17685861 T-C Hetero UTR_3_PRIME
SBS Chr7 27657939 A-G Homo INTRON
SBS Chr8 7246045 G-T Hetero INTERGENIC
SBS Chr8 7516858 T-A Hetero INTERGENIC
SBS Chr8 12285628 T-A Hetero INTERGENIC
SBS Chr8 12303587 G-A Hetero INTERGENIC
SBS Chr8 26703819 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g215400
SBS Chr9 554381 G-A Homo INTERGENIC
SBS Chr9 555572 C-A Homo INTERGENIC
SBS Chr9 17733539 G-A Hetero INTERGENIC
SBS Chr9 20330524 C-T Homo INTERGENIC
SBS Chr10 245991 A-G Hetero INTERGENIC
SBS Chr10 934397 C-A Hetero STOP_GAINED OsKitaake10g006700
SBS Chr10 5302668 A-T Hetero INTERGENIC
SBS Chr10 14309504 T-G Hetero INTERGENIC
SBS Chr10 18877239 C-T Hetero INTERGENIC
SBS Chr10 20193300 A-G Homo INTERGENIC
SBS Chr10 20193302 A-T Homo INTERGENIC
SBS Chr11 5636682 A-T Hetero INTERGENIC
SBS Chr11 11481380 C-A Hetero INTERGENIC
SBS Chr11 16319382 C-T Homo INTERGENIC
SBS Chr11 17456681 C-A Hetero INTERGENIC
SBS Chr11 28965214 C-A Hetero INTERGENIC
SBS Chr12 13564408 T-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 387717 387724 7
Deletion Chr1 517238 517259 21
Deletion Chr7 10355096 10355098 2
Deletion Chr1 11848762 11848855 93
Deletion Chr3 14317703 14317712 9
Deletion Chr3 25058001 25138000 79999 4
Deletion Chr4 29009001 29076000 66999 11
Deletion Chr4 29441001 29538000 96999 12
Deletion Chr4 29544001 29588000 43999 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22175582 22175605 22 OsKitaake03g241635
Insertion Chr9 3020915 3020917 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7079717 7964807
Inversion Chr1 7435362 7964799
Inversion Chr8 21003538 21413745
Inversion Chr8 21003543 21413748
Inversion Chr4 29014681 29442325 OsKitaake04g218800
Inversion Chr4 29075967 29591311

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3903761 Chr7 15664981
Translocation Chr6 22145174 Chr4 29031328

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8165253	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	11066937	T-C	Hetero	INTERGENIC
SBS	Chr1	12334218	C-A	Hetero	INTERGENIC
SBS	Chr1	22956883	C-T	Hetero	INTERGENIC
SBS	Chr1	42361033	G-C	Hetero	INTRON
SBS	Chr2	3684095	G-A	Hetero	INTERGENIC
SBS	Chr2	3979792	C-A	Hetero	INTERGENIC
SBS	Chr2	5855739	C-T	Hetero	INTERGENIC
SBS	Chr2	8563347	C-T	Hetero	INTERGENIC
SBS	Chr2	23490059	C-T	Hetero	INTERGENIC
SBS	Chr3	4264165	A-T	Hetero	INTRON
SBS	Chr3	5145554	C-T	Hetero	INTERGENIC
SBS	Chr3	8252536	T-C	Homo	INTERGENIC
SBS	Chr3	14230002	C-A	Homo	INTERGENIC
SBS	Chr3	14230004	T-C	Homo	INTERGENIC
SBS	Chr3	18567240	T-C	Homo	INTRON
SBS	Chr3	33004105	T-C	Hetero	INTERGENIC
SBS	Chr3	33576808	C-A	Hetero	INTERGENIC
SBS	Chr3	35745274	C-T	Hetero	INTERGENIC
SBS	Chr4	3983458	T-C	Hetero	INTERGENIC
SBS	Chr6	15303589	C-T	Hetero	INTERGENIC
SBS	Chr6	27807324	T-A	Hetero	INTERGENIC
SBS	Chr7	13420530	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	16508878	A-C	Hetero	INTERGENIC
SBS	Chr7	17685861	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	27657939	A-G	Homo	INTRON
SBS	Chr8	7246045	G-T	Hetero	INTERGENIC
SBS	Chr8	7516858	T-A	Hetero	INTERGENIC
SBS	Chr8	12285628	T-A	Hetero	INTERGENIC
SBS	Chr8	12303587	G-A	Hetero	INTERGENIC
SBS	Chr8	26703819	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g215400
SBS	Chr9	554381	G-A	Homo	INTERGENIC
SBS	Chr9	555572	C-A	Homo	INTERGENIC
SBS	Chr9	17733539	G-A	Hetero	INTERGENIC
SBS	Chr9	20330524	C-T	Homo	INTERGENIC
SBS	Chr10	245991	A-G	Hetero	INTERGENIC
SBS	Chr10	934397	C-A	Hetero	STOP_GAINED	OsKitaake10g006700
SBS	Chr10	5302668	A-T	Hetero	INTERGENIC
SBS	Chr10	14309504	T-G	Hetero	INTERGENIC
SBS	Chr10	18877239	C-T	Hetero	INTERGENIC
SBS	Chr10	20193300	A-G	Homo	INTERGENIC
SBS	Chr10	20193302	A-T	Homo	INTERGENIC
SBS	Chr11	5636682	A-T	Hetero	INTERGENIC
SBS	Chr11	11481380	C-A	Hetero	INTERGENIC
SBS	Chr11	16319382	C-T	Homo	INTERGENIC
SBS	Chr11	17456681	C-A	Hetero	INTERGENIC
SBS	Chr11	28965214	C-A	Hetero	INTERGENIC
SBS	Chr12	13564408	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	387717	387724	7
Deletion	Chr1	517238	517259	21
Deletion	Chr7	10355096	10355098	2
Deletion	Chr1	11848762	11848855	93
Deletion	Chr3	14317703	14317712	9
Deletion	Chr3	25058001	25138000	79999	4
Deletion	Chr4	29009001	29076000	66999	11
Deletion	Chr4	29441001	29538000	96999	12
Deletion	Chr4	29544001	29588000	43999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7079717	7964807
Inversion	Chr1	7435362	7964799
Inversion	Chr8	21003538	21413745
Inversion	Chr8	21003543	21413748
Inversion	Chr4	29014681	29442325	OsKitaake04g218800
Inversion	Chr4	29075967	29591311

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes