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Mutant Information

Mutant Name	FN2534-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2534-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1149793 G-A Homo INTERGENIC
SBS Chr1 13275003 T-A Hetero INTERGENIC
SBS Chr1 17865362 T-C Hetero INTERGENIC
SBS Chr2 14114363 C-T Hetero INTERGENIC
SBS Chr2 17352137 G-A Hetero INTERGENIC
SBS Chr2 18181818 G-T Hetero INTERGENIC
SBS Chr2 21327018 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g205600
SBS Chr3 1320643 G-A Hetero INTERGENIC
SBS Chr3 3348970 A-G Hetero INTERGENIC
SBS Chr3 5778998 A-T Hetero INTERGENIC
SBS Chr3 10116059 C-T Hetero INTRON
SBS Chr3 11187675 C-G Hetero INTRON
SBS Chr3 17119818 A-G Hetero INTERGENIC
SBS Chr3 22545097 T-C Hetero INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr3 32244778 G-A Hetero INTERGENIC
SBS Chr3 35566414 A-G Hetero INTERGENIC
SBS Chr4 1458489 A-G Hetero INTERGENIC
SBS Chr4 1632659 G-A Hetero INTERGENIC
SBS Chr4 34617156 G-C Homo INTERGENIC
SBS Chr5 5013549 T-C Hetero INTERGENIC
SBS Chr5 7696743 A-G Hetero INTERGENIC
SBS Chr5 16055376 T-G Hetero INTERGENIC
SBS Chr5 18142056 C-T Hetero INTERGENIC
SBS Chr5 19925783 G-A Hetero INTERGENIC
SBS Chr7 10292654 G-C Hetero INTERGENIC
SBS Chr7 12036167 C-G Hetero INTERGENIC
SBS Chr7 12593537 C-T Hetero INTERGENIC
SBS Chr7 26147158 G-C Homo INTERGENIC
SBS Chr8 2977356 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g032900
SBS Chr8 4810389 A-T Hetero INTERGENIC
SBS Chr8 24135426 T-A Hetero INTERGENIC
SBS Chr9 6119250 C-T Homo INTERGENIC
SBS Chr10 1383147 G-A Homo INTERGENIC
SBS Chr10 5206477 A-G Homo INTERGENIC
SBS Chr10 6742404 C-T Hetero INTERGENIC
SBS Chr10 14809285 T-C Hetero INTERGENIC
SBS Chr10 19508787 T-A Hetero INTERGENIC
SBS Chr11 12603435 G-A Hetero INTERGENIC
SBS Chr11 12605801 T-G Hetero INTERGENIC
SBS Chr11 14677901 C-G Hetero INTERGENIC
SBS Chr11 27277628 A-G Hetero UTR_3_PRIME
SBS Chr12 5584768 G-C Hetero INTERGENIC
SBS Chr12 8594803 A-G Hetero INTERGENIC
SBS Chr12 8858661 C-T Hetero INTERGENIC
SBS Chr12 9260328 G-A Hetero INTERGENIC
SBS Chr12 18257653 G-C Hetero INTERGENIC
SBS Chr12 18352615 A-G Hetero INTERGENIC
SBS Chr12 23476695 G-T Hetero SYNONYMOUS_CODING

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4107737 4107738 1
Deletion Chr6 13532069 13532071 2
Deletion Chr5 18496001 18582000 85999 11
Deletion Chr12 22246001 22464000 217999 12
Deletion Chr1 29421786 29421789 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21142910 21142912 1
Insertion Chr12 19828679 19828682 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18546038 18620479 2
Inversion Chr10 18546042 18620480 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10966524 Chr4 5493171

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1149793	G-A	Homo	INTERGENIC
SBS	Chr1	13275003	T-A	Hetero	INTERGENIC
SBS	Chr1	17865362	T-C	Hetero	INTERGENIC
SBS	Chr2	14114363	C-T	Hetero	INTERGENIC
SBS	Chr2	17352137	G-A	Hetero	INTERGENIC
SBS	Chr2	18181818	G-T	Hetero	INTERGENIC
SBS	Chr2	21327018	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g205600
SBS	Chr3	1320643	G-A	Hetero	INTERGENIC
SBS	Chr3	3348970	A-G	Hetero	INTERGENIC
SBS	Chr3	5778998	A-T	Hetero	INTERGENIC
SBS	Chr3	10116059	C-T	Hetero	INTRON
SBS	Chr3	11187675	C-G	Hetero	INTRON
SBS	Chr3	17119818	A-G	Hetero	INTERGENIC
SBS	Chr3	22545097	T-C	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr3	32244778	G-A	Hetero	INTERGENIC
SBS	Chr3	35566414	A-G	Hetero	INTERGENIC
SBS	Chr4	1458489	A-G	Hetero	INTERGENIC
SBS	Chr4	1632659	G-A	Hetero	INTERGENIC
SBS	Chr4	34617156	G-C	Homo	INTERGENIC
SBS	Chr5	5013549	T-C	Hetero	INTERGENIC
SBS	Chr5	7696743	A-G	Hetero	INTERGENIC
SBS	Chr5	16055376	T-G	Hetero	INTERGENIC
SBS	Chr5	18142056	C-T	Hetero	INTERGENIC
SBS	Chr5	19925783	G-A	Hetero	INTERGENIC
SBS	Chr7	10292654	G-C	Hetero	INTERGENIC
SBS	Chr7	12036167	C-G	Hetero	INTERGENIC
SBS	Chr7	12593537	C-T	Hetero	INTERGENIC
SBS	Chr7	26147158	G-C	Homo	INTERGENIC
SBS	Chr8	2977356	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g032900
SBS	Chr8	4810389	A-T	Hetero	INTERGENIC
SBS	Chr8	24135426	T-A	Hetero	INTERGENIC
SBS	Chr9	6119250	C-T	Homo	INTERGENIC
SBS	Chr10	1383147	G-A	Homo	INTERGENIC
SBS	Chr10	5206477	A-G	Homo	INTERGENIC
SBS	Chr10	6742404	C-T	Hetero	INTERGENIC
SBS	Chr10	14809285	T-C	Hetero	INTERGENIC
SBS	Chr10	19508787	T-A	Hetero	INTERGENIC
SBS	Chr11	12603435	G-A	Hetero	INTERGENIC
SBS	Chr11	12605801	T-G	Hetero	INTERGENIC
SBS	Chr11	14677901	C-G	Hetero	INTERGENIC
SBS	Chr11	27277628	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	5584768	G-C	Hetero	INTERGENIC
SBS	Chr12	8594803	A-G	Hetero	INTERGENIC
SBS	Chr12	8858661	C-T	Hetero	INTERGENIC
SBS	Chr12	9260328	G-A	Hetero	INTERGENIC
SBS	Chr12	18257653	G-C	Hetero	INTERGENIC
SBS	Chr12	18352615	A-G	Hetero	INTERGENIC
SBS	Chr12	23476695	G-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4107737	4107738	1
Deletion	Chr6	13532069	13532071	2
Deletion	Chr5	18496001	18582000	85999	11
Deletion	Chr12	22246001	22464000	217999	12
Deletion	Chr1	29421786	29421789	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18546038	18620479	2
Inversion	Chr10	18546042	18620480	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes