Search Kitaake

Mutant Information

Mutant Name	FN2535-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2535-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13941287 T-C Hetero INTERGENIC
SBS Chr1 20590206 G-A Hetero INTERGENIC
SBS Chr1 24092677 C-G Hetero INTERGENIC
SBS Chr1 35123952 C-T Hetero INTERGENIC
SBS Chr1 38115956 A-G Homo INTERGENIC
SBS Chr1 44088605 A-C Homo INTRON
SBS Chr1 44088606 C-A Homo INTRON
SBS Chr2 2217856 A-G Hetero INTERGENIC
SBS Chr2 3294672 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g048000
SBS Chr2 11190847 G-A Hetero INTERGENIC
SBS Chr2 11191310 A-T Hetero INTERGENIC
SBS Chr2 29407770 C-G Homo INTERGENIC
SBS Chr2 31817405 C-A Hetero INTRON
SBS Chr3 9106162 G-A Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 29076881 C-T Homo INTERGENIC
SBS Chr3 36669607 G-A Hetero INTERGENIC
SBS Chr4 1445072 G-C Hetero INTERGENIC
SBS Chr4 7010704 T-C Hetero INTERGENIC
SBS Chr4 8508129 A-G Hetero INTERGENIC
SBS Chr4 10359715 G-C Hetero INTERGENIC
SBS Chr4 15659963 T-C Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 27068561 A-G Hetero INTERGENIC
SBS Chr5 620909 A-G Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 9109681 C-A Hetero INTERGENIC
SBS Chr7 9574089 T-A Hetero INTERGENIC
SBS Chr7 9574090 C-T Hetero INTERGENIC
SBS Chr7 14845210 C-T Hetero INTERGENIC
SBS Chr7 23012118 A-G Hetero INTERGENIC
SBS Chr8 18699219 G-C Homo INTERGENIC
SBS Chr8 24999318 A-G Hetero INTERGENIC
SBS Chr9 7098426 T-C Hetero INTRON
SBS Chr9 14834260 C-T Hetero INTERGENIC
SBS Chr9 20993293 A-G Hetero INTERGENIC
SBS Chr9 21720469 C-T Hetero INTRON
SBS Chr9 22369188 G-T Hetero INTRON
SBS Chr10 7241353 C-G Hetero INTERGENIC
SBS Chr10 8561303 T-C Hetero INTERGENIC
SBS Chr10 14131523 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g087600
SBS Chr10 19984414 A-T Hetero INTERGENIC
SBS Chr10 22329225 T-C Hetero INTERGENIC
SBS Chr11 16173167 C-A Hetero INTERGENIC
SBS Chr11 17955707 C-T Hetero INTERGENIC
SBS Chr12 3502381 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g049300
SBS Chr12 8954554 C-T Homo INTERGENIC
SBS Chr12 16925737 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 95879 95880 1
Deletion Chr7 7334001 7381000 46999 2
Deletion Chr4 7945689 7945696 7
Deletion Chr4 10076001 10126000 49999 OsKitaake04g054100
Deletion Chr12 10230560 10230568 8
Deletion Chr6 15336213 15336221 8
Deletion Chr8 19135001 19420000 284999 8
Deletion Chr5 20888766 20888769 3
Deletion Chr6 26225315 26225326 11
Deletion Chr11 29496342 29496356 14
Deletion Chr3 35616618 35616625 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 8172562 8172565 2
Insertion Chr5 3661025 3661033 7
Insertion Chr8 26521257 26521260 2
Insertion Chr11 17439839 17439843 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 7331602 7600930
Inversion Chr7 14678440 14808835
Inversion Chr7 14678450 14808845

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3654899 Chr1 12497880 OsKitaake06g050800
Translocation Chr8 7249212 Chr1 20787946
Translocation Chr8 7249217 Chr1 20787960
Translocation Chr7 7331845 Chr3 31978070 OsKitaake03g338500
Translocation Chr7 7334028 Chr3 31978075 OsKitaake03g338500
Translocation Chr7 7601126 Chr1 12497957
Translocation Chr4 10076270 Chr2 29047376 OsKitaake04g054100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13941287	T-C	Hetero	INTERGENIC
SBS	Chr1	20590206	G-A	Hetero	INTERGENIC
SBS	Chr1	24092677	C-G	Hetero	INTERGENIC
SBS	Chr1	35123952	C-T	Hetero	INTERGENIC
SBS	Chr1	38115956	A-G	Homo	INTERGENIC
SBS	Chr1	44088605	A-C	Homo	INTRON
SBS	Chr1	44088606	C-A	Homo	INTRON
SBS	Chr2	2217856	A-G	Hetero	INTERGENIC
SBS	Chr2	3294672	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g048000
SBS	Chr2	11190847	G-A	Hetero	INTERGENIC
SBS	Chr2	11191310	A-T	Hetero	INTERGENIC
SBS	Chr2	29407770	C-G	Homo	INTERGENIC
SBS	Chr2	31817405	C-A	Hetero	INTRON
SBS	Chr3	9106162	G-A	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	29076881	C-T	Homo	INTERGENIC
SBS	Chr3	36669607	G-A	Hetero	INTERGENIC
SBS	Chr4	1445072	G-C	Hetero	INTERGENIC
SBS	Chr4	7010704	T-C	Hetero	INTERGENIC
SBS	Chr4	8508129	A-G	Hetero	INTERGENIC
SBS	Chr4	10359715	G-C	Hetero	INTERGENIC
SBS	Chr4	15659963	T-C	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	27068561	A-G	Hetero	INTERGENIC
SBS	Chr5	620909	A-G	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	9109681	C-A	Hetero	INTERGENIC
SBS	Chr7	9574089	T-A	Hetero	INTERGENIC
SBS	Chr7	9574090	C-T	Hetero	INTERGENIC
SBS	Chr7	14845210	C-T	Hetero	INTERGENIC
SBS	Chr7	23012118	A-G	Hetero	INTERGENIC
SBS	Chr8	18699219	G-C	Homo	INTERGENIC
SBS	Chr8	24999318	A-G	Hetero	INTERGENIC
SBS	Chr9	7098426	T-C	Hetero	INTRON
SBS	Chr9	14834260	C-T	Hetero	INTERGENIC
SBS	Chr9	20993293	A-G	Hetero	INTERGENIC
SBS	Chr9	21720469	C-T	Hetero	INTRON
SBS	Chr9	22369188	G-T	Hetero	INTRON
SBS	Chr10	7241353	C-G	Hetero	INTERGENIC
SBS	Chr10	8561303	T-C	Hetero	INTERGENIC
SBS	Chr10	14131523	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g087600
SBS	Chr10	19984414	A-T	Hetero	INTERGENIC
SBS	Chr10	22329225	T-C	Hetero	INTERGENIC
SBS	Chr11	16173167	C-A	Hetero	INTERGENIC
SBS	Chr11	17955707	C-T	Hetero	INTERGENIC
SBS	Chr12	3502381	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g049300
SBS	Chr12	8954554	C-T	Homo	INTERGENIC
SBS	Chr12	16925737	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	95879	95880	1
Deletion	Chr7	7334001	7381000	46999	2
Deletion	Chr4	7945689	7945696	7
Deletion	Chr4	10076001	10126000	49999	OsKitaake04g054100
Deletion	Chr12	10230560	10230568	8
Deletion	Chr6	15336213	15336221	8
Deletion	Chr8	19135001	19420000	284999	8
Deletion	Chr5	20888766	20888769	3
Deletion	Chr6	26225315	26225326	11
Deletion	Chr11	29496342	29496356	14
Deletion	Chr3	35616618	35616625	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7331602	7600930
Inversion	Chr7	14678440	14808835
Inversion	Chr7	14678450	14808845

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes