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Mutant Information

Mutant Name	FN2536-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2536-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21197536 A-G Homo INTERGENIC
SBS Chr1 31611668 C-T Hetero INTERGENIC
SBS Chr1 31611670 A-G Hetero INTERGENIC
SBS Chr1 31636662 A-G Hetero INTERGENIC
SBS Chr2 313518 C-T Hetero INTRON
SBS Chr2 6923786 C-T Hetero INTERGENIC
SBS Chr2 6923787 A-T Hetero INTERGENIC
SBS Chr2 21225835 C-T Hetero INTERGENIC
SBS Chr2 30615323 C-T Hetero INTERGENIC
SBS Chr3 3253335 G-T Hetero INTERGENIC
SBS Chr3 7555792 C-A Hetero INTERGENIC
SBS Chr3 22800955 C-T Hetero INTERGENIC
SBS Chr3 31492634 A-C Homo INTERGENIC
SBS Chr3 33985115 G-T Hetero START_GAINED
SBS Chr3 33985121 A-T Hetero UTR_5_PRIME
SBS Chr3 37291719 A-T Hetero INTERGENIC
SBS Chr4 3274573 A-G Hetero INTERGENIC
SBS Chr4 10245464 T-C Hetero INTERGENIC
SBS Chr4 22614195 T-A Hetero INTERGENIC
SBS Chr4 31885412 G-A Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 6429367 T-C Homo INTERGENIC
SBS Chr6 2223374 T-C Hetero INTERGENIC
SBS Chr6 10140785 A-G Hetero INTERGENIC
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr6 17955978 C-T Hetero INTRON
SBS Chr7 18099582 C-A Hetero INTERGENIC
SBS Chr7 20821929 T-C Hetero INTERGENIC
SBS Chr8 6164391 G-T Hetero INTERGENIC
SBS Chr8 13825180 T-A Hetero INTERGENIC
SBS Chr8 14695852 G-T Homo INTERGENIC
SBS Chr8 22705687 C-T Hetero INTERGENIC
SBS Chr9 1406830 T-A Hetero INTERGENIC
SBS Chr9 5491228 C-T Hetero INTERGENIC
SBS Chr9 6207483 C-T Hetero INTRON
SBS Chr9 11493272 G-A Homo INTRON
SBS Chr9 12659334 T-G Hetero INTERGENIC
SBS Chr9 13355930 T-G Hetero INTERGENIC
SBS Chr10 2253576 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g018000
SBS Chr10 21294970 C-T Hetero INTERGENIC
SBS Chr10 21621477 A-T Hetero INTERGENIC
SBS Chr10 22884564 G-T Hetero INTRON
SBS Chr11 13337400 G-A Hetero INTERGENIC
SBS Chr11 18336265 A-C Hetero UTR_5_PRIME
SBS Chr11 24659724 G-T Hetero SYNONYMOUS_CODING
SBS Chr11 24659725 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g199700
SBS Chr12 22301961 G-A Homo INTERGENIC
SBS Chr12 24692111 C-T Hetero INTRON

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2105389 2105391 2
Deletion Chr2 11569880 11569882 2
Deletion Chr11 18287001 18329000 41999 4
Deletion Chr12 25164430 25164432 2
Deletion Chr2 35924565 35924566 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3013941 3013944 2
Insertion Chr12 17628256 17628260 3
Insertion Chr5 12395585 12395587 1
Insertion Chr7 14345184 14345186 1
Insertion Chr9 13906984 13906986 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6811149 6886394 OsKitaake02g093400
Inversion Chr2 6885717 7474402
Inversion Chr2 7081326 7316182 OsKitaake02g095000
Inversion Chr6 17559284 17706965
Inversion Chr6 17559298 17706970

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1818224 Chr1 529673 OsKitaake01g115600
Translocation Chr12 19634568 Chr1 16090972
Translocation Chr8 29315005 Chr3 25446769

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21197536	A-G	Homo	INTERGENIC
SBS	Chr1	31611668	C-T	Hetero	INTERGENIC
SBS	Chr1	31611670	A-G	Hetero	INTERGENIC
SBS	Chr1	31636662	A-G	Hetero	INTERGENIC
SBS	Chr2	313518	C-T	Hetero	INTRON
SBS	Chr2	6923786	C-T	Hetero	INTERGENIC
SBS	Chr2	6923787	A-T	Hetero	INTERGENIC
SBS	Chr2	21225835	C-T	Hetero	INTERGENIC
SBS	Chr2	30615323	C-T	Hetero	INTERGENIC
SBS	Chr3	3253335	G-T	Hetero	INTERGENIC
SBS	Chr3	7555792	C-A	Hetero	INTERGENIC
SBS	Chr3	22800955	C-T	Hetero	INTERGENIC
SBS	Chr3	31492634	A-C	Homo	INTERGENIC
SBS	Chr3	33985115	G-T	Hetero	START_GAINED
SBS	Chr3	33985121	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	37291719	A-T	Hetero	INTERGENIC
SBS	Chr4	3274573	A-G	Hetero	INTERGENIC
SBS	Chr4	10245464	T-C	Hetero	INTERGENIC
SBS	Chr4	22614195	T-A	Hetero	INTERGENIC
SBS	Chr4	31885412	G-A	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	6429367	T-C	Homo	INTERGENIC
SBS	Chr6	2223374	T-C	Hetero	INTERGENIC
SBS	Chr6	10140785	A-G	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr6	17955978	C-T	Hetero	INTRON
SBS	Chr7	18099582	C-A	Hetero	INTERGENIC
SBS	Chr7	20821929	T-C	Hetero	INTERGENIC
SBS	Chr8	6164391	G-T	Hetero	INTERGENIC
SBS	Chr8	13825180	T-A	Hetero	INTERGENIC
SBS	Chr8	14695852	G-T	Homo	INTERGENIC
SBS	Chr8	22705687	C-T	Hetero	INTERGENIC
SBS	Chr9	1406830	T-A	Hetero	INTERGENIC
SBS	Chr9	5491228	C-T	Hetero	INTERGENIC
SBS	Chr9	6207483	C-T	Hetero	INTRON
SBS	Chr9	11493272	G-A	Homo	INTRON
SBS	Chr9	12659334	T-G	Hetero	INTERGENIC
SBS	Chr9	13355930	T-G	Hetero	INTERGENIC
SBS	Chr10	2253576	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g018000
SBS	Chr10	21294970	C-T	Hetero	INTERGENIC
SBS	Chr10	21621477	A-T	Hetero	INTERGENIC
SBS	Chr10	22884564	G-T	Hetero	INTRON
SBS	Chr11	13337400	G-A	Hetero	INTERGENIC
SBS	Chr11	18336265	A-C	Hetero	UTR_5_PRIME
SBS	Chr11	24659724	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	24659725	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g199700
SBS	Chr12	22301961	G-A	Homo	INTERGENIC
SBS	Chr12	24692111	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2105389	2105391	2
Deletion	Chr2	11569880	11569882	2
Deletion	Chr11	18287001	18329000	41999	4
Deletion	Chr12	25164430	25164432	2
Deletion	Chr2	35924565	35924566	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6811149	6886394	OsKitaake02g093400
Inversion	Chr2	6885717	7474402
Inversion	Chr2	7081326	7316182	OsKitaake02g095000
Inversion	Chr6	17559284	17706965
Inversion	Chr6	17559298	17706970

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes