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Mutant Information

Mutant Name	FN2537-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2537-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15449744 G-A Hetero INTERGENIC
SBS Chr1 17414339 C-A Homo INTERGENIC
SBS Chr1 18638602 C-T Hetero INTERGENIC
SBS Chr1 29706337 A-T Hetero INTERGENIC
SBS Chr2 3044233 G-A Hetero INTERGENIC
SBS Chr2 7875319 G-A Homo INTERGENIC
SBS Chr2 16786665 C-T Homo INTERGENIC
SBS Chr2 19868432 C-T Hetero INTRON
SBS Chr2 28035239 T-A Hetero INTERGENIC
SBS Chr2 30754950 A-G Hetero INTERGENIC
SBS Chr3 5184228 C-T Homo INTERGENIC
SBS Chr3 31519815 T-A Hetero INTERGENIC
SBS Chr3 31887181 C-T Hetero INTERGENIC
SBS Chr4 8712791 G-A Hetero INTRON
SBS Chr4 19739576 T-A Homo INTERGENIC
SBS Chr4 36604060 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 1612150 T-C Hetero INTERGENIC
SBS Chr5 6808547 G-T Hetero INTERGENIC
SBS Chr5 12858046 G-A Hetero INTERGENIC
SBS Chr6 8079959 A-G Hetero INTERGENIC
SBS Chr6 9053744 G-A Hetero INTERGENIC
SBS Chr6 9927318 C-T Hetero INTERGENIC
SBS Chr6 12214451 G-C Hetero INTERGENIC
SBS Chr6 21288904 G-A Hetero INTRON
SBS Chr7 3859570 A-C Homo INTERGENIC
SBS Chr7 9936912 A-T Hetero INTERGENIC
SBS Chr7 10473493 T-A Homo INTERGENIC
SBS Chr7 10615902 C-A Homo INTERGENIC
SBS Chr7 20332099 G-A Hetero INTRON
SBS Chr7 27538615 A-T Hetero INTRON
SBS Chr7 27538619 T-G Hetero INTRON
SBS Chr8 7878039 C-T Hetero INTRON
SBS Chr8 14732938 C-T Hetero INTERGENIC
SBS Chr8 28526292 T-A Hetero INTERGENIC
SBS Chr9 11926254 T-G Hetero INTERGENIC
SBS Chr9 14705751 G-T Homo INTERGENIC
SBS Chr10 2797638 G-C Hetero INTERGENIC
SBS Chr10 8137395 T-C Hetero INTERGENIC
SBS Chr10 8360821 C-T Hetero INTERGENIC
SBS Chr10 8360825 C-T Hetero INTERGENIC
SBS Chr11 212302 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g001300
SBS Chr11 2356823 G-A Hetero UTR_3_PRIME
SBS Chr11 21152246 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g167660
SBS Chr12 11473569 T-A Homo INTERGENIC
SBS Chr12 14442171 T-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2204335 2204341 6
Deletion Chr11 2600633 2600640 7
Deletion Chr10 7753912 7753916 4
Deletion Chr5 9524332 9524341 9
Deletion Chr2 15187569 15187570 1
Deletion Chr3 18119428 18119430 2
Deletion Chr6 18732001 18790000 57999 4
Deletion Chr3 18885581 18885582 1
Deletion Chr12 20760810 20760818 8
Deletion Chr10 21933492 21933493 1 OsKitaake10g177100
Deletion Chr8 28514001 28523000 8999 2
Deletion Chr5 28834648 28834649 1
Deletion Chr1 36869220 36869228 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16691769 16691772 2
Insertion Chr9 3078804 3078812 7

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 14082607 Chr1 31063862 OsKitaake01g309700
Translocation Chr10 14084998 Chr1 31063857 OsKitaake01g309700
Translocation Chr11 21703395 Chr8 16181510
Translocation Chr3 31992490 Chr2 31032821

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15449744	G-A	Hetero	INTERGENIC
SBS	Chr1	17414339	C-A	Homo	INTERGENIC
SBS	Chr1	18638602	C-T	Hetero	INTERGENIC
SBS	Chr1	29706337	A-T	Hetero	INTERGENIC
SBS	Chr2	3044233	G-A	Hetero	INTERGENIC
SBS	Chr2	7875319	G-A	Homo	INTERGENIC
SBS	Chr2	16786665	C-T	Homo	INTERGENIC
SBS	Chr2	19868432	C-T	Hetero	INTRON
SBS	Chr2	28035239	T-A	Hetero	INTERGENIC
SBS	Chr2	30754950	A-G	Hetero	INTERGENIC
SBS	Chr3	5184228	C-T	Homo	INTERGENIC
SBS	Chr3	31519815	T-A	Hetero	INTERGENIC
SBS	Chr3	31887181	C-T	Hetero	INTERGENIC
SBS	Chr4	8712791	G-A	Hetero	INTRON
SBS	Chr4	19739576	T-A	Homo	INTERGENIC
SBS	Chr4	36604060	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1612150	T-C	Hetero	INTERGENIC
SBS	Chr5	6808547	G-T	Hetero	INTERGENIC
SBS	Chr5	12858046	G-A	Hetero	INTERGENIC
SBS	Chr6	8079959	A-G	Hetero	INTERGENIC
SBS	Chr6	9053744	G-A	Hetero	INTERGENIC
SBS	Chr6	9927318	C-T	Hetero	INTERGENIC
SBS	Chr6	12214451	G-C	Hetero	INTERGENIC
SBS	Chr6	21288904	G-A	Hetero	INTRON
SBS	Chr7	3859570	A-C	Homo	INTERGENIC
SBS	Chr7	9936912	A-T	Hetero	INTERGENIC
SBS	Chr7	10473493	T-A	Homo	INTERGENIC
SBS	Chr7	10615902	C-A	Homo	INTERGENIC
SBS	Chr7	20332099	G-A	Hetero	INTRON
SBS	Chr7	27538615	A-T	Hetero	INTRON
SBS	Chr7	27538619	T-G	Hetero	INTRON
SBS	Chr8	7878039	C-T	Hetero	INTRON
SBS	Chr8	14732938	C-T	Hetero	INTERGENIC
SBS	Chr8	28526292	T-A	Hetero	INTERGENIC
SBS	Chr9	11926254	T-G	Hetero	INTERGENIC
SBS	Chr9	14705751	G-T	Homo	INTERGENIC
SBS	Chr10	2797638	G-C	Hetero	INTERGENIC
SBS	Chr10	8137395	T-C	Hetero	INTERGENIC
SBS	Chr10	8360821	C-T	Hetero	INTERGENIC
SBS	Chr10	8360825	C-T	Hetero	INTERGENIC
SBS	Chr11	212302	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g001300
SBS	Chr11	2356823	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	21152246	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g167660
SBS	Chr12	11473569	T-A	Homo	INTERGENIC
SBS	Chr12	14442171	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2204335	2204341	6
Deletion	Chr11	2600633	2600640	7
Deletion	Chr10	7753912	7753916	4
Deletion	Chr5	9524332	9524341	9
Deletion	Chr2	15187569	15187570	1
Deletion	Chr3	18119428	18119430	2
Deletion	Chr6	18732001	18790000	57999	4
Deletion	Chr3	18885581	18885582	1
Deletion	Chr12	20760810	20760818	8
Deletion	Chr10	21933492	21933493	1	OsKitaake10g177100
Deletion	Chr8	28514001	28523000	8999	2
Deletion	Chr5	28834648	28834649	1
Deletion	Chr1	36869220	36869228	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	14082607	Chr1	31063862	OsKitaake01g309700
Translocation	Chr10	14084998	Chr1	31063857	OsKitaake01g309700
Translocation	Chr11	21703395	Chr8	16181510
Translocation	Chr3	31992490	Chr2	31032821

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes