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Mutant Information

Mutant Name	FN2538-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2538-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2063511 C-T Hetero INTERGENIC
SBS Chr1 18277696 A-T Hetero INTERGENIC
SBS Chr1 19810810 C-T Hetero INTERGENIC
SBS Chr2 8552728 C-T Homo INTERGENIC
SBS Chr2 17119021 C-T Hetero INTERGENIC
SBS Chr2 18488207 A-G Hetero INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr2 31401707 G-C Hetero INTERGENIC
SBS Chr3 7993868 T-G Hetero INTRON
SBS Chr3 14779883 A-G Hetero INTRON
SBS Chr3 17073368 G-A Hetero INTERGENIC
SBS Chr3 20495187 G-T Hetero INTERGENIC
SBS Chr3 21649586 G-A Hetero INTERGENIC
SBS Chr4 789091 G-A Homo INTERGENIC
SBS Chr4 6142677 G-T Hetero INTERGENIC
SBS Chr4 11489047 G-A Homo INTERGENIC
SBS Chr4 35665633 T-A Hetero UTR_5_PRIME
SBS Chr5 8484961 C-G Hetero INTERGENIC
SBS Chr5 12631142 G-A Hetero INTERGENIC
SBS Chr5 13235210 T-G Hetero INTERGENIC
SBS Chr5 21748994 A-T Hetero UTR_5_PRIME
SBS Chr5 25090756 G-T Hetero INTERGENIC
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 14815879 A-T Hetero INTERGENIC
SBS Chr6 18681425 C-T Hetero INTERGENIC
SBS Chr6 18800215 G-A Hetero INTRON
SBS Chr6 20766322 T-C Hetero INTERGENIC
SBS Chr7 8341722 G-T Hetero INTERGENIC
SBS Chr7 9063746 G-A Hetero INTERGENIC
SBS Chr7 14800318 A-G Hetero INTERGENIC
SBS Chr8 1856481 C-A Hetero INTERGENIC
SBS Chr8 7775390 T-C Homo UTR_5_PRIME
SBS Chr8 11385950 G-T Hetero INTERGENIC
SBS Chr8 18412083 G-A Hetero INTERGENIC
SBS Chr8 22002372 C-T Hetero INTERGENIC
SBS Chr8 22002373 G-T Hetero INTERGENIC
SBS Chr8 27612445 A-G Hetero INTERGENIC
SBS Chr10 20943835 A-G Hetero INTRON
SBS Chr10 21900272 C-A Hetero INTERGENIC
SBS Chr11 12290773 C-A Homo INTERGENIC
SBS Chr11 20805265 G-A Hetero INTERGENIC
SBS Chr11 21011924 A-T Hetero INTERGENIC
SBS Chr11 24786794 A-T Hetero INTERGENIC
SBS Chr11 27175841 T-C Hetero INTERGENIC
SBS Chr12 14027426 T-A Hetero INTERGENIC
SBS Chr12 18613187 C-T Homo INTRON
SBS Chr12 21010037 C-T Homo INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1926143 1926144 1
Deletion Chr10 4493991 4494003 12
Deletion Chr2 4626066 4626067 1 OsKitaake02g063900
Deletion Chr6 4717878 4717879 1
Deletion Chr3 7005036 7005039 3
Deletion Chr4 7979828 7979839 11
Deletion Chr4 8461625 8461648 23
Deletion Chr8 8845968 8845969 1
Deletion Chr4 11650025 11650026 1
Deletion Chr10 15762366 15762454 88
Deletion Chr4 19357476 19357478 2
Deletion Chr7 21432767 21432780 13
Deletion Chr8 22713419 22713433 14
Deletion Chr3 25461119 25461129 10
Deletion Chr1 35685217 35685224 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 17731886 17731889 2
Insertion Chr11 20432674 20432677 2 OsKitaake11g159900

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8503212 9024872
Inversion Chr11 19037734 19396220
Inversion Chr8 23671814 23870859 2
Inversion Chr8 23671822 23870866 2
Inversion Chr11 25202843 25675974
Inversion Chr11 25673173 26040106 OsKitaake11g207400
Inversion Chr11 25675989 26040115

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 9199925 Chr1 32778420 OsKitaake03g125700
Translocation Chr3 9201218 Chr1 32778419 OsKitaake03g125800
Translocation Chr6 17979210 Chr2 30453144 OsKitaake02g310400
Translocation Chr6 17979213 Chr2 30437609
Translocation Chr11 23440613 Chr9 8503209

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2063511	C-T	Hetero	INTERGENIC
SBS	Chr1	18277696	A-T	Hetero	INTERGENIC
SBS	Chr1	19810810	C-T	Hetero	INTERGENIC
SBS	Chr2	8552728	C-T	Homo	INTERGENIC
SBS	Chr2	17119021	C-T	Hetero	INTERGENIC
SBS	Chr2	18488207	A-G	Hetero	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr2	31401707	G-C	Hetero	INTERGENIC
SBS	Chr3	7993868	T-G	Hetero	INTRON
SBS	Chr3	14779883	A-G	Hetero	INTRON
SBS	Chr3	17073368	G-A	Hetero	INTERGENIC
SBS	Chr3	20495187	G-T	Hetero	INTERGENIC
SBS	Chr3	21649586	G-A	Hetero	INTERGENIC
SBS	Chr4	789091	G-A	Homo	INTERGENIC
SBS	Chr4	6142677	G-T	Hetero	INTERGENIC
SBS	Chr4	11489047	G-A	Homo	INTERGENIC
SBS	Chr4	35665633	T-A	Hetero	UTR_5_PRIME
SBS	Chr5	8484961	C-G	Hetero	INTERGENIC
SBS	Chr5	12631142	G-A	Hetero	INTERGENIC
SBS	Chr5	13235210	T-G	Hetero	INTERGENIC
SBS	Chr5	21748994	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	25090756	G-T	Hetero	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	14815879	A-T	Hetero	INTERGENIC
SBS	Chr6	18681425	C-T	Hetero	INTERGENIC
SBS	Chr6	18800215	G-A	Hetero	INTRON
SBS	Chr6	20766322	T-C	Hetero	INTERGENIC
SBS	Chr7	8341722	G-T	Hetero	INTERGENIC
SBS	Chr7	9063746	G-A	Hetero	INTERGENIC
SBS	Chr7	14800318	A-G	Hetero	INTERGENIC
SBS	Chr8	1856481	C-A	Hetero	INTERGENIC
SBS	Chr8	7775390	T-C	Homo	UTR_5_PRIME
SBS	Chr8	11385950	G-T	Hetero	INTERGENIC
SBS	Chr8	18412083	G-A	Hetero	INTERGENIC
SBS	Chr8	22002372	C-T	Hetero	INTERGENIC
SBS	Chr8	22002373	G-T	Hetero	INTERGENIC
SBS	Chr8	27612445	A-G	Hetero	INTERGENIC
SBS	Chr10	20943835	A-G	Hetero	INTRON
SBS	Chr10	21900272	C-A	Hetero	INTERGENIC
SBS	Chr11	12290773	C-A	Homo	INTERGENIC
SBS	Chr11	20805265	G-A	Hetero	INTERGENIC
SBS	Chr11	21011924	A-T	Hetero	INTERGENIC
SBS	Chr11	24786794	A-T	Hetero	INTERGENIC
SBS	Chr11	27175841	T-C	Hetero	INTERGENIC
SBS	Chr12	14027426	T-A	Hetero	INTERGENIC
SBS	Chr12	18613187	C-T	Homo	INTRON
SBS	Chr12	21010037	C-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1926143	1926144	1
Deletion	Chr10	4493991	4494003	12
Deletion	Chr2	4626066	4626067	1	OsKitaake02g063900
Deletion	Chr6	4717878	4717879	1
Deletion	Chr3	7005036	7005039	3
Deletion	Chr4	7979828	7979839	11
Deletion	Chr4	8461625	8461648	23
Deletion	Chr8	8845968	8845969	1
Deletion	Chr4	11650025	11650026	1
Deletion	Chr10	15762366	15762454	88
Deletion	Chr4	19357476	19357478	2
Deletion	Chr7	21432767	21432780	13
Deletion	Chr8	22713419	22713433	14
Deletion	Chr3	25461119	25461129	10
Deletion	Chr1	35685217	35685224	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8503212	9024872
Inversion	Chr11	19037734	19396220
Inversion	Chr8	23671814	23870859	2
Inversion	Chr8	23671822	23870866	2
Inversion	Chr11	25202843	25675974
Inversion	Chr11	25673173	26040106	OsKitaake11g207400
Inversion	Chr11	25675989	26040115

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes