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Mutant Information

Mutant Name	FN2541-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2541-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8391416 T-C Hetero INTERGENIC
SBS Chr1 26539285 G-A Hetero INTERGENIC
SBS Chr1 39665715 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g428200
SBS Chr2 8267683 A-G Homo INTERGENIC
SBS Chr2 22435888 T-C Hetero INTRON
SBS Chr2 27015900 T-A Hetero INTRON
SBS Chr3 17081454 G-A Hetero INTERGENIC
SBS Chr3 22248210 C-T Hetero INTERGENIC
SBS Chr3 26867851 A-G Hetero INTERGENIC
SBS Chr3 27928603 T-C Hetero INTERGENIC
SBS Chr3 28718613 G-A Homo INTERGENIC
SBS Chr3 30487196 C-T Hetero INTERGENIC
SBS Chr3 31975698 A-C Homo UTR_3_PRIME
SBS Chr3 36502560 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g405700
SBS Chr4 371785 C-T Hetero INTERGENIC
SBS Chr4 1568457 G-C Hetero INTRON
SBS Chr4 6803525 C-T Hetero INTERGENIC
SBS Chr4 7080720 G-C Hetero INTERGENIC
SBS Chr4 8051832 A-T Hetero INTERGENIC
SBS Chr4 26049815 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g182900
SBS Chr4 35833732 C-T Homo SYNONYMOUS_CODING
SBS Chr5 6985683 T-G Hetero INTRON
SBS Chr5 7931412 C-A Hetero INTERGENIC
SBS Chr5 25455587 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 12051874 A-G Hetero INTERGENIC
SBS Chr6 20875998 C-T Hetero INTERGENIC
SBS Chr6 21411680 C-A Hetero INTERGENIC
SBS Chr6 23158918 G-A Hetero INTRON
SBS Chr6 28533943 A-G Hetero INTERGENIC
SBS Chr7 11269980 C-T Hetero INTERGENIC
SBS Chr8 3026261 T-C Hetero INTERGENIC
SBS Chr8 7753035 C-T Hetero INTERGENIC
SBS Chr8 17472243 C-T Hetero INTERGENIC
SBS Chr8 20401510 G-A Hetero INTERGENIC
SBS Chr9 11202890 C-T Homo INTRON
SBS Chr10 132429 T-C Hetero INTERGENIC
SBS Chr10 12579405 T-G Hetero INTERGENIC
SBS Chr11 1368988 T-C Hetero INTERGENIC
SBS Chr11 10118338 C-G Hetero INTRON
SBS Chr11 11376457 T-C Hetero INTERGENIC
SBS Chr11 14675874 G-A Hetero INTERGENIC
SBS Chr12 2101892 A-T Homo INTRON
SBS Chr12 2101893 A-T Homo INTRON
SBS Chr12 11024159 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2237376 2237378 2 OsKitaake10g017800
Deletion Chr8 6113440 6113441 1
Deletion Chr11 6440836 6440843 7
Deletion Chr3 8260912 8260926 14
Deletion Chr6 9619092 9619094 2
Deletion Chr7 10635825 10635827 2
Deletion Chr5 12742671 12742690 19
Deletion Chr11 13367111 13367112 1
Deletion Chr5 14825117 14825118 1
Deletion Chr12 18327666 18327667 1
Deletion Chr4 19481829 19481843 14
Deletion Chr11 24358244 24358261 17
Deletion Chr12 27010551 27010566 15
Deletion Chr11 27904734 27904741 7 OsKitaake11g228500
Deletion Chr3 33678891 33678901 10
Deletion Chr4 35088574 35088575 1 OsKitaake04g294600
Deletion Chr1 38738346 38738396 50

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 15830780 15830783 2
Insertion Chr4 33933 33935 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8391416	T-C	Hetero	INTERGENIC
SBS	Chr1	26539285	G-A	Hetero	INTERGENIC
SBS	Chr1	39665715	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g428200
SBS	Chr2	8267683	A-G	Homo	INTERGENIC
SBS	Chr2	22435888	T-C	Hetero	INTRON
SBS	Chr2	27015900	T-A	Hetero	INTRON
SBS	Chr3	17081454	G-A	Hetero	INTERGENIC
SBS	Chr3	22248210	C-T	Hetero	INTERGENIC
SBS	Chr3	26867851	A-G	Hetero	INTERGENIC
SBS	Chr3	27928603	T-C	Hetero	INTERGENIC
SBS	Chr3	28718613	G-A	Homo	INTERGENIC
SBS	Chr3	30487196	C-T	Hetero	INTERGENIC
SBS	Chr3	31975698	A-C	Homo	UTR_3_PRIME
SBS	Chr3	36502560	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g405700
SBS	Chr4	371785	C-T	Hetero	INTERGENIC
SBS	Chr4	1568457	G-C	Hetero	INTRON
SBS	Chr4	6803525	C-T	Hetero	INTERGENIC
SBS	Chr4	7080720	G-C	Hetero	INTERGENIC
SBS	Chr4	8051832	A-T	Hetero	INTERGENIC
SBS	Chr4	26049815	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g182900
SBS	Chr4	35833732	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	6985683	T-G	Hetero	INTRON
SBS	Chr5	7931412	C-A	Hetero	INTERGENIC
SBS	Chr5	25455587	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	12051874	A-G	Hetero	INTERGENIC
SBS	Chr6	20875998	C-T	Hetero	INTERGENIC
SBS	Chr6	21411680	C-A	Hetero	INTERGENIC
SBS	Chr6	23158918	G-A	Hetero	INTRON
SBS	Chr6	28533943	A-G	Hetero	INTERGENIC
SBS	Chr7	11269980	C-T	Hetero	INTERGENIC
SBS	Chr8	3026261	T-C	Hetero	INTERGENIC
SBS	Chr8	7753035	C-T	Hetero	INTERGENIC
SBS	Chr8	17472243	C-T	Hetero	INTERGENIC
SBS	Chr8	20401510	G-A	Hetero	INTERGENIC
SBS	Chr9	11202890	C-T	Homo	INTRON
SBS	Chr10	132429	T-C	Hetero	INTERGENIC
SBS	Chr10	12579405	T-G	Hetero	INTERGENIC
SBS	Chr11	1368988	T-C	Hetero	INTERGENIC
SBS	Chr11	10118338	C-G	Hetero	INTRON
SBS	Chr11	11376457	T-C	Hetero	INTERGENIC
SBS	Chr11	14675874	G-A	Hetero	INTERGENIC
SBS	Chr12	2101892	A-T	Homo	INTRON
SBS	Chr12	2101893	A-T	Homo	INTRON
SBS	Chr12	11024159	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2237376	2237378	2	OsKitaake10g017800
Deletion	Chr8	6113440	6113441	1
Deletion	Chr11	6440836	6440843	7
Deletion	Chr3	8260912	8260926	14
Deletion	Chr6	9619092	9619094	2
Deletion	Chr7	10635825	10635827	2
Deletion	Chr5	12742671	12742690	19
Deletion	Chr11	13367111	13367112	1
Deletion	Chr5	14825117	14825118	1
Deletion	Chr12	18327666	18327667	1
Deletion	Chr4	19481829	19481843	14
Deletion	Chr11	24358244	24358261	17
Deletion	Chr12	27010551	27010566	15
Deletion	Chr11	27904734	27904741	7	OsKitaake11g228500
Deletion	Chr3	33678891	33678901	10
Deletion	Chr4	35088574	35088575	1	OsKitaake04g294600
Deletion	Chr1	38738346	38738396	50

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes