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Mutant Information

Mutant Name	FN260-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN260-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5745032	G-A	Homo	INTRON
SBS	Chr1	6506322	G-A	Hetero	INTRON
SBS	Chr1	15953272	C-T	Homo	INTERGENIC
SBS	Chr1	36674282	A-G	Hetero	INTERGENIC
SBS	Chr2	6489975	A-G	Homo	INTERGENIC
SBS	Chr2	7442983	A-G	Homo	INTERGENIC
SBS	Chr2	19923213	A-T	Hetero	INTERGENIC
SBS	Chr2	32376443	T-C	Hetero	INTERGENIC
SBS	Chr2	35749539	A-T	Hetero	INTERGENIC
SBS	Chr4	6028338	G-C	Hetero	INTRON
SBS	Chr4	8004736	G-A	Hetero	INTERGENIC
SBS	Chr4	21045296	G-C	Hetero	INTRON
SBS	Chr4	23858120	G-A	Hetero	INTERGENIC
SBS	Chr4	24722089	A-G	Hetero	INTRON
SBS	Chr5	5471848	C-T	Hetero	INTERGENIC
SBS	Chr5	12414556	T-G	Hetero	INTERGENIC
SBS	Chr5	14606903	C-T	Hetero	INTERGENIC
SBS	Chr5	18444034	A-T	Hetero	INTERGENIC
SBS	Chr6	12558433	A-C	Hetero	INTERGENIC
SBS	Chr6	29605310	C-T	Hetero	INTERGENIC
SBS	Chr6	30627652	G-A	Hetero	INTERGENIC
SBS	Chr7	10307132	C-T	Hetero	INTERGENIC
SBS	Chr7	12022436	A-C	Hetero	INTERGENIC
SBS	Chr8	14089935	C-T	Hetero	INTERGENIC
SBS	Chr10	1869366	C-T	Homo	INTRON
SBS	Chr10	10419998	G-A	Hetero	INTERGENIC
SBS	Chr12	8405492	A-T	Hetero	INTERGENIC
SBS	Chr12	8405493	C-T	Hetero	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	450241	450248	7
Deletion	Chr7	1118767	1118785	18
Deletion	Chr9	4190210	4190211	1
Deletion	Chr2	4629259	4629272	13
Deletion	Chr4	8177676	8177682	6
Deletion	Chr4	14598678	14598681	3
Deletion	Chr3	15425478	15425486	8
Deletion	Chr3	15713221	15713228	7
Deletion	Chr4	16678833	16678834	1
Deletion	Chr1	16963651	16963658	7

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr5	14257666	14257669	2
Insertion	Chr8	25620498	25620501	2
Insertion	Chr4	8898522	8898524	1
Insertion	Chr5	30254000	30254002	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	22899528	23048561	2
Inversion	Chr7	22899534	23048847	2
Inversion	Chr4	33240271	33860780
Inversion	Chr4	33240279	33860790

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	15556749	Chr3	13902412	OsKitaake10g100600
Translocation	Chr10	15556750	Chr3	13903477	OsKitaake10g100600
Translocation	Chr7	23048564	Chr5	14196674	2
Translocation	Chr7	23048841	Chr5	14196665	2
Translocation	Chr12	23805105	Chr9	17305730	OsKitaake09g130100
Translocation	Chr12	23805962	Chr9	17305716	2