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Mutant Information

Mutant Name	FN2609-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2609-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6276694 C-T Hetero INTERGENIC
SBS Chr1 12971624 G-A Hetero INTERGENIC
SBS Chr1 17522900 G-T Hetero UTR_3_PRIME
SBS Chr1 25016945 G-A Hetero INTERGENIC
SBS Chr1 25698793 A-G Hetero INTERGENIC
SBS Chr1 30650836 A-G Hetero INTERGENIC
SBS Chr1 42302327 T-C Hetero INTRON
SBS Chr2 5766891 T-A Hetero INTERGENIC
SBS Chr2 16802177 C-T Hetero INTERGENIC
SBS Chr2 18318002 C-T Hetero UTR_5_PRIME
SBS Chr2 26923277 C-G Hetero INTERGENIC
SBS Chr2 26953164 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g268900
SBS Chr3 6721120 C-A Homo INTERGENIC
SBS Chr3 9060751 A-T Hetero INTERGENIC
SBS Chr3 10707442 G-A Hetero INTERGENIC
SBS Chr3 19580993 G-A Hetero INTERGENIC
SBS Chr3 22122358 G-A Hetero INTERGENIC
SBS Chr4 4809681 G-T Hetero INTERGENIC
SBS Chr4 18303807 C-G Hetero INTERGENIC
SBS Chr4 22928478 T-A Hetero INTERGENIC
SBS Chr4 23340586 T-C Hetero INTRON
SBS Chr4 25062569 T-C Hetero UTR_3_PRIME
SBS Chr4 28491405 A-G Homo INTRON
SBS Chr5 256917 G-A Hetero INTERGENIC
SBS Chr5 1396666 T-A Hetero INTERGENIC
SBS Chr5 7380501 A-T Hetero UTR_3_PRIME
SBS Chr5 7655117 T-C Homo INTERGENIC
SBS Chr5 7779761 T-A Hetero UTR_3_PRIME
SBS Chr5 10030031 C-T Hetero INTERGENIC
SBS Chr5 11388696 C-T Hetero INTERGENIC
SBS Chr5 24130470 C-T Hetero INTERGENIC
SBS Chr5 25377456 C-G Hetero INTRON
SBS Chr6 4045009 A-T Homo INTERGENIC
SBS Chr6 7718719 T-A Homo INTERGENIC
SBS Chr6 8759146 G-A Hetero INTERGENIC
SBS Chr7 6437917 C-T Hetero INTERGENIC
SBS Chr7 12469774 A-G Hetero INTERGENIC
SBS Chr7 19106278 G-A Hetero INTERGENIC
SBS Chr7 19364783 G-A Hetero INTERGENIC
SBS Chr7 27095393 T-C Homo INTRON
SBS Chr7 29009193 A-T Homo INTERGENIC
SBS Chr9 44671 C-T Hetero INTERGENIC
SBS Chr9 2703731 G-C Hetero INTERGENIC
SBS Chr9 10274767 C-T Hetero INTRON
SBS Chr9 17981767 T-A Homo INTERGENIC
SBS Chr11 10368525 T-C Hetero INTERGENIC
SBS Chr11 12307650 C-T Hetero INTERGENIC
SBS Chr11 12446441 A-G Homo INTERGENIC
SBS Chr11 16860320 A-T Hetero INTERGENIC
SBS Chr12 9199694 C-T Hetero INTERGENIC
SBS Chr12 10701642 T-C Homo INTERGENIC
SBS Chr12 20547400 G-A Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1030482 1030484 2
Deletion Chr11 3043937 3043944 7
Deletion Chr3 3735830 3735832 2
Deletion Chr6 3959690 3959692 2
Deletion Chr6 4044622 4044625 3
Deletion Chr1 5036025 5036047 22
Deletion Chr11 6205577 6205579 2
Deletion Chr8 9332544 9332545 1
Deletion Chr12 10500739 10500740 1
Deletion Chr6 11844526 11844537 11
Deletion Chr6 12455001 12572000 116999 10
Deletion Chr11 12481270 12481279 9
Deletion Chr6 12589001 12628000 38999 11
Deletion Chr3 14009429 14009437 8
Deletion Chr6 14021317 14021318 1
Deletion Chr9 15779259 15779272 13 OsKitaake09g112500
Deletion Chr6 16448459 16448469 10
Deletion Chr8 18215477 18215487 10
Deletion Chr1 18356589 18356594 5
Deletion Chr1 19955084 19955085 1
Deletion Chr8 21363121 21363146 25
Deletion Chr8 21852556 21852560 4
Deletion Chr2 27687108 27687113 5 OsKitaake02g278000
Deletion Chr1 31122248 31122254 6 OsKitaake01g310500
Deletion Chr2 33320242 33320248 6
Deletion Chr1 39077703 39077704 1
Deletion Chr1 39444555 39444566 11
Deletion Chr1 39930001 39956000 25999 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 16074502 16074505 2
Insertion Chr12 1677486 1677489 2 OsKitaake12g025300

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1392508 1398994
Inversion Chr2 5638827 6202048 OsKitaake02g077800
Inversion Chr1 10466165 10684213 2
Inversion Chr1 10466227 10684220 2
Inversion Chr9 16895223 16904927 OsKitaake09g125300
Inversion Chr9 16895257 16904938 OsKitaake09g125300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4947470 Chr4 1390574

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6276694	C-T	Hetero	INTERGENIC
SBS	Chr1	12971624	G-A	Hetero	INTERGENIC
SBS	Chr1	17522900	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	25016945	G-A	Hetero	INTERGENIC
SBS	Chr1	25698793	A-G	Hetero	INTERGENIC
SBS	Chr1	30650836	A-G	Hetero	INTERGENIC
SBS	Chr1	42302327	T-C	Hetero	INTRON
SBS	Chr2	5766891	T-A	Hetero	INTERGENIC
SBS	Chr2	16802177	C-T	Hetero	INTERGENIC
SBS	Chr2	18318002	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	26923277	C-G	Hetero	INTERGENIC
SBS	Chr2	26953164	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g268900
SBS	Chr3	6721120	C-A	Homo	INTERGENIC
SBS	Chr3	9060751	A-T	Hetero	INTERGENIC
SBS	Chr3	10707442	G-A	Hetero	INTERGENIC
SBS	Chr3	19580993	G-A	Hetero	INTERGENIC
SBS	Chr3	22122358	G-A	Hetero	INTERGENIC
SBS	Chr4	4809681	G-T	Hetero	INTERGENIC
SBS	Chr4	18303807	C-G	Hetero	INTERGENIC
SBS	Chr4	22928478	T-A	Hetero	INTERGENIC
SBS	Chr4	23340586	T-C	Hetero	INTRON
SBS	Chr4	25062569	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	28491405	A-G	Homo	INTRON
SBS	Chr5	256917	G-A	Hetero	INTERGENIC
SBS	Chr5	1396666	T-A	Hetero	INTERGENIC
SBS	Chr5	7380501	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	7655117	T-C	Homo	INTERGENIC
SBS	Chr5	7779761	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	10030031	C-T	Hetero	INTERGENIC
SBS	Chr5	11388696	C-T	Hetero	INTERGENIC
SBS	Chr5	24130470	C-T	Hetero	INTERGENIC
SBS	Chr5	25377456	C-G	Hetero	INTRON
SBS	Chr6	4045009	A-T	Homo	INTERGENIC
SBS	Chr6	7718719	T-A	Homo	INTERGENIC
SBS	Chr6	8759146	G-A	Hetero	INTERGENIC
SBS	Chr7	6437917	C-T	Hetero	INTERGENIC
SBS	Chr7	12469774	A-G	Hetero	INTERGENIC
SBS	Chr7	19106278	G-A	Hetero	INTERGENIC
SBS	Chr7	19364783	G-A	Hetero	INTERGENIC
SBS	Chr7	27095393	T-C	Homo	INTRON
SBS	Chr7	29009193	A-T	Homo	INTERGENIC
SBS	Chr9	44671	C-T	Hetero	INTERGENIC
SBS	Chr9	2703731	G-C	Hetero	INTERGENIC
SBS	Chr9	10274767	C-T	Hetero	INTRON
SBS	Chr9	17981767	T-A	Homo	INTERGENIC
SBS	Chr11	10368525	T-C	Hetero	INTERGENIC
SBS	Chr11	12307650	C-T	Hetero	INTERGENIC
SBS	Chr11	12446441	A-G	Homo	INTERGENIC
SBS	Chr11	16860320	A-T	Hetero	INTERGENIC
SBS	Chr12	9199694	C-T	Hetero	INTERGENIC
SBS	Chr12	10701642	T-C	Homo	INTERGENIC
SBS	Chr12	20547400	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1030482	1030484	2
Deletion	Chr11	3043937	3043944	7
Deletion	Chr3	3735830	3735832	2
Deletion	Chr6	3959690	3959692	2
Deletion	Chr6	4044622	4044625	3
Deletion	Chr1	5036025	5036047	22
Deletion	Chr11	6205577	6205579	2
Deletion	Chr8	9332544	9332545	1
Deletion	Chr12	10500739	10500740	1
Deletion	Chr6	11844526	11844537	11
Deletion	Chr6	12455001	12572000	116999	10
Deletion	Chr11	12481270	12481279	9
Deletion	Chr6	12589001	12628000	38999	11
Deletion	Chr3	14009429	14009437	8
Deletion	Chr6	14021317	14021318	1
Deletion	Chr9	15779259	15779272	13	OsKitaake09g112500
Deletion	Chr6	16448459	16448469	10
Deletion	Chr8	18215477	18215487	10
Deletion	Chr1	18356589	18356594	5
Deletion	Chr1	19955084	19955085	1
Deletion	Chr8	21363121	21363146	25
Deletion	Chr8	21852556	21852560	4
Deletion	Chr2	27687108	27687113	5	OsKitaake02g278000
Deletion	Chr1	31122248	31122254	6	OsKitaake01g310500
Deletion	Chr2	33320242	33320248	6
Deletion	Chr1	39077703	39077704	1
Deletion	Chr1	39444555	39444566	11
Deletion	Chr1	39930001	39956000	25999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1392508	1398994
Inversion	Chr2	5638827	6202048	OsKitaake02g077800
Inversion	Chr1	10466165	10684213	2
Inversion	Chr1	10466227	10684220	2
Inversion	Chr9	16895223	16904927	OsKitaake09g125300
Inversion	Chr9	16895257	16904938	OsKitaake09g125300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes