Search Kitaake

Mutant Information

Mutant Name	FN266-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN266-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13209985 G-A Hetero INTERGENIC
SBS Chr1 28023614 T-C Hetero INTERGENIC
SBS Chr2 8649697 C-T Hetero INTERGENIC
SBS Chr2 19253051 T-A Hetero INTERGENIC
SBS Chr2 30515968 T-A Hetero INTERGENIC
SBS Chr2 34748372 C-A Hetero INTERGENIC
SBS Chr3 7664567 A-G Homo INTERGENIC
SBS Chr3 7899939 G-A Homo INTERGENIC
SBS Chr3 19439012 C-T Hetero INTERGENIC
SBS Chr4 11438977 C-T Hetero INTERGENIC
SBS Chr5 1011375 C-T Hetero INTERGENIC
SBS Chr5 5622124 G-A Hetero INTERGENIC
SBS Chr5 9309318 C-T Hetero INTERGENIC
SBS Chr5 9309320 G-T Hetero INTERGENIC
SBS Chr5 21128597 G-A Hetero INTERGENIC
SBS Chr5 22365975 G-A Hetero INTERGENIC
SBS Chr5 25991999 G-A Hetero INTRON
SBS Chr6 418512 T-A Hetero INTERGENIC
SBS Chr6 17313337 T-C Hetero INTERGENIC
SBS Chr6 26152800 T-C Hetero INTERGENIC
SBS Chr7 16998709 C-T Hetero INTERGENIC
SBS Chr7 27466781 T-A Hetero UTR_5_PRIME
SBS Chr9 2327871 C-A Hetero INTERGENIC
SBS Chr9 3751617 C-A Hetero INTERGENIC
SBS Chr9 4216820 T-C Hetero INTERGENIC
SBS Chr9 4560918 T-G Hetero INTERGENIC
SBS Chr9 8739797 T-G Homo INTERGENIC
SBS Chr11 1859121 G-A Hetero INTERGENIC
SBS Chr11 4005983 A-G Hetero INTERGENIC
SBS Chr11 12134980 A-C Homo SYNONYMOUS_CODING
SBS Chr11 17274966 T-G Homo INTERGENIC
SBS Chr12 703819 C-A Homo INTRON

Deletions: 37

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2007666 2007668 2
Deletion Chr5 2203001 2214000 10999
Deletion Chr9 2602001 2623000 20999
Deletion Chr1 2920001 2929000 8999
Deletion Chr11 5818001 5827000 8999
Deletion Chr4 6451001 6480000 28999
Deletion Chr7 7923001 7939000 15999 OsKitaake07g087300
Deletion Chr2 8006406 8006407 1
Deletion Chr8 8909001 8923000 13999
Deletion Chr9 9667001 9684000 16999
Deletion Chr12 9728001 9752000 23999
Deletion Chr1 10257001 10269000 11999
Deletion Chr8 11527001 11548000 20999
Deletion Chr12 11869001 11877000 7999
Deletion Chr3 12694056 12694077 21
Deletion Chr1 14028001 14046000 17999 OsKitaake01g161500
Deletion Chr3 14325001 14336000 10999
Deletion Chr3 15738001 15749000 10999
Deletion Chr8 15783001 15810000 26999
Deletion Chr9 16742001 16760000 17999
Deletion Chr6 16857001 16871000 13999
Deletion Chr1 17486001 17500000 13999
Deletion Chr9 18782001 18796000 13999
Deletion Chr12 19480001 19490000 9999
Deletion Chr3 20917001 20941000 23999
Deletion Chr6 21199001 21213000 13999
Deletion Chr7 22505001 22518000 12999 6
Deletion Chr3 23221001 23233000 11999
Deletion Chr6 23562001 23583000 20999 OsKitaake06g207806
Deletion Chr12 23970001 23979000 8999
Deletion Chr5 24508001 24528000 19999
Deletion Chr7 26140001 26150000 9999
Deletion Chr1 28838001 28850000 11999 OsKitaake01g280100
Deletion Chr2 29190001 29209000 18999
Deletion Chr7 29425001 29435000 9999
Deletion Chr4 31196001 31216000 19999
Deletion Chr1 37598328 37598337 9

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3195166 3195170 3
Insertion Chr3 29779032 29779035 2
Insertion Chr5 4470689 4470692 2
Insertion Chr6 11316573 11316576 2
Insertion Chr2 20834599 20834602 2
Insertion Chr4 18345247 18345250 2
Insertion Chr5 12532511 12532513 1
Insertion Chr5 30231639 30231641 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 521427 Chr2 10776381 2
Translocation Chr7 535027 Chr2 10776389 2
Translocation Chr11 23199995 Chr7 535493 OsKitaake07g006000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13209985	G-A	Hetero	INTERGENIC
SBS	Chr1	28023614	T-C	Hetero	INTERGENIC
SBS	Chr2	8649697	C-T	Hetero	INTERGENIC
SBS	Chr2	19253051	T-A	Hetero	INTERGENIC
SBS	Chr2	30515968	T-A	Hetero	INTERGENIC
SBS	Chr2	34748372	C-A	Hetero	INTERGENIC
SBS	Chr3	7664567	A-G	Homo	INTERGENIC
SBS	Chr3	7899939	G-A	Homo	INTERGENIC
SBS	Chr3	19439012	C-T	Hetero	INTERGENIC
SBS	Chr4	11438977	C-T	Hetero	INTERGENIC
SBS	Chr5	1011375	C-T	Hetero	INTERGENIC
SBS	Chr5	5622124	G-A	Hetero	INTERGENIC
SBS	Chr5	9309318	C-T	Hetero	INTERGENIC
SBS	Chr5	9309320	G-T	Hetero	INTERGENIC
SBS	Chr5	21128597	G-A	Hetero	INTERGENIC
SBS	Chr5	22365975	G-A	Hetero	INTERGENIC
SBS	Chr5	25991999	G-A	Hetero	INTRON
SBS	Chr6	418512	T-A	Hetero	INTERGENIC
SBS	Chr6	17313337	T-C	Hetero	INTERGENIC
SBS	Chr6	26152800	T-C	Hetero	INTERGENIC
SBS	Chr7	16998709	C-T	Hetero	INTERGENIC
SBS	Chr7	27466781	T-A	Hetero	UTR_5_PRIME
SBS	Chr9	2327871	C-A	Hetero	INTERGENIC
SBS	Chr9	3751617	C-A	Hetero	INTERGENIC
SBS	Chr9	4216820	T-C	Hetero	INTERGENIC
SBS	Chr9	4560918	T-G	Hetero	INTERGENIC
SBS	Chr9	8739797	T-G	Homo	INTERGENIC
SBS	Chr11	1859121	G-A	Hetero	INTERGENIC
SBS	Chr11	4005983	A-G	Hetero	INTERGENIC
SBS	Chr11	12134980	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr11	17274966	T-G	Homo	INTERGENIC
SBS	Chr12	703819	C-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2007666	2007668	2
Deletion	Chr5	2203001	2214000	10999
Deletion	Chr9	2602001	2623000	20999
Deletion	Chr1	2920001	2929000	8999
Deletion	Chr11	5818001	5827000	8999
Deletion	Chr4	6451001	6480000	28999
Deletion	Chr7	7923001	7939000	15999	OsKitaake07g087300
Deletion	Chr2	8006406	8006407	1
Deletion	Chr8	8909001	8923000	13999
Deletion	Chr9	9667001	9684000	16999
Deletion	Chr12	9728001	9752000	23999
Deletion	Chr1	10257001	10269000	11999
Deletion	Chr8	11527001	11548000	20999
Deletion	Chr12	11869001	11877000	7999
Deletion	Chr3	12694056	12694077	21
Deletion	Chr1	14028001	14046000	17999	OsKitaake01g161500
Deletion	Chr3	14325001	14336000	10999
Deletion	Chr3	15738001	15749000	10999
Deletion	Chr8	15783001	15810000	26999
Deletion	Chr9	16742001	16760000	17999
Deletion	Chr6	16857001	16871000	13999
Deletion	Chr1	17486001	17500000	13999
Deletion	Chr9	18782001	18796000	13999
Deletion	Chr12	19480001	19490000	9999
Deletion	Chr3	20917001	20941000	23999
Deletion	Chr6	21199001	21213000	13999
Deletion	Chr7	22505001	22518000	12999	6
Deletion	Chr3	23221001	23233000	11999
Deletion	Chr6	23562001	23583000	20999	OsKitaake06g207806
Deletion	Chr12	23970001	23979000	8999
Deletion	Chr5	24508001	24528000	19999
Deletion	Chr7	26140001	26150000	9999
Deletion	Chr1	28838001	28850000	11999	OsKitaake01g280100
Deletion	Chr2	29190001	29209000	18999
Deletion	Chr7	29425001	29435000	9999
Deletion	Chr4	31196001	31216000	19999
Deletion	Chr1	37598328	37598337	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	521427	Chr2	10776381	2
Translocation	Chr7	535027	Chr2	10776389	2
Translocation	Chr11	23199995	Chr7	535493	OsKitaake07g006000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes