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Mutant Information

Mutant Name	FN2664-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2664-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 62

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5217807 A-G Hetero INTERGENIC
SBS Chr1 11111998 T-A Hetero INTERGENIC
SBS Chr1 16859770 G-T Homo INTERGENIC
SBS Chr1 21269450 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g207400
SBS Chr1 26454356 G-A Hetero INTRON
SBS Chr1 29805496 G-A Homo INTERGENIC
SBS Chr2 552826 C-G Hetero INTERGENIC
SBS Chr2 1893669 G-T Hetero INTERGENIC
SBS Chr2 19203668 T-C Hetero INTERGENIC
SBS Chr2 23449799 G-A Homo INTRON
SBS Chr2 30793152 C-T Hetero INTERGENIC
SBS Chr3 9818600 T-A Homo INTERGENIC
SBS Chr3 14862939 G-A Hetero INTERGENIC
SBS Chr3 16319223 T-C Hetero INTERGENIC
SBS Chr3 20437513 A-G Hetero INTERGENIC
SBS Chr3 24462733 A-C Hetero INTERGENIC
SBS Chr3 26211941 A-T Hetero INTERGENIC
SBS Chr3 28090167 G-A Hetero INTERGENIC
SBS Chr3 29093963 G-A Hetero INTRON
SBS Chr3 33767175 T-C Homo INTERGENIC
SBS Chr4 24168851 A-G Hetero INTERGENIC
SBS Chr4 29552151 G-A Hetero INTERGENIC
SBS Chr4 33726741 C-T Hetero INTERGENIC
SBS Chr4 36096254 C-T Hetero INTERGENIC
SBS Chr5 4768784 G-T Homo INTERGENIC
SBS Chr5 6424900 T-C Hetero INTERGENIC
SBS Chr5 7353186 G-A Hetero INTERGENIC
SBS Chr5 10961396 C-T Hetero INTERGENIC
SBS Chr5 13807735 C-T Hetero INTERGENIC
SBS Chr5 17893339 T-C Hetero INTERGENIC
SBS Chr5 24784085 C-A Homo INTERGENIC
SBS Chr6 2209418 A-T Homo INTERGENIC
SBS Chr6 8681977 G-A Hetero INTERGENIC
SBS Chr6 11878754 T-A Hetero INTERGENIC
SBS Chr6 18914537 C-T Homo INTERGENIC
SBS Chr6 29099135 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g268500
SBS Chr7 4558027 A-G Hetero INTERGENIC
SBS Chr7 11316426 G-C Hetero INTERGENIC
SBS Chr7 15772614 G-A Hetero INTRON
SBS Chr7 25174983 C-T Hetero INTRON
SBS Chr8 9982 G-A Hetero INTERGENIC
SBS Chr8 7232371 T-C Hetero INTERGENIC
SBS Chr8 8097233 A-T Hetero INTERGENIC
SBS Chr8 10105034 C-T Hetero INTERGENIC
SBS Chr8 10939522 A-T Hetero INTRON
SBS Chr9 996418 A-G Hetero INTERGENIC
SBS Chr9 3451879 C-T Hetero INTERGENIC
SBS Chr9 4805287 G-T Hetero INTERGENIC
SBS Chr9 9081614 G-A Hetero INTERGENIC
SBS Chr9 18725819 G-A Hetero INTERGENIC
SBS Chr9 20050155 G-A Hetero INTERGENIC
SBS Chr10 1423822 C-T Hetero INTERGENIC
SBS Chr10 1423827 C-G Hetero INTERGENIC
SBS Chr10 21440815 G-A Hetero INTERGENIC
SBS Chr10 22209361 A-G Hetero INTERGENIC
SBS Chr11 11522354 G-A Hetero INTERGENIC
SBS Chr11 12286166 T-C Hetero INTERGENIC
SBS Chr11 19653389 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g153500
SBS Chr11 24688007 A-T Hetero INTERGENIC
SBS Chr12 3004473 T-C Hetero INTERGENIC
SBS Chr12 4807192 G-A Hetero INTERGENIC
SBS Chr12 9930230 G-A Homo INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 377186 377200 14 OsKitaake07g003400
Deletion Chr9 1006091 1006099 8
Deletion Chr4 2098943 2098963 20
Deletion Chr2 3798409 3798410 1 OsKitaake02g055000
Deletion Chr4 6157414 6157428 14
Deletion Chr1 9969936 9969943 7
Deletion Chr1 10234294 10234296 2
Deletion Chr6 10752386 10752389 3
Deletion Chr6 10841326 10841333 7
Deletion Chr1 13846546 13846548 2
Deletion Chr1 13861643 13861644 1
Deletion Chr1 14194187 14194190 3
Deletion Chr12 17554868 17554871 3 OsKitaake12g129300
Deletion Chr11 18977210 18977216 6
Deletion Chr1 22874145 22874146 1
Deletion Chr6 26526491 26526498 7
Deletion Chr1 26832388 26832390 2
Deletion Chr7 27428493 27428499 6 OsKitaake07g255000
Deletion Chr11 28608425 28608439 14
Deletion Chr6 30814001 31032000 217999 32
Deletion Chr4 33076241 33076243 2
Deletion Chr1 34875775 34875785 10
Deletion Chr1 38472405 38472408 3 OsKitaake01g410900
Deletion Chr1 40466482 40466483 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16285087 16285090 2
Insertion Chr4 30011536 30011539 2
Insertion Chr6 7853292 7853295 2
Insertion Chr10 14440429 14440435 5
Insertion Chr12 23648515 23648520 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 26501985 26815785
Inversion Chr12 26639543 26815780
Inversion Chr2 29736729 29842770 OsKitaake02g300700
Inversion Chr2 29736730 29842777 OsKitaake02g300700

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 561549 Chr6 30816767

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5217807	A-G	Hetero	INTERGENIC
SBS	Chr1	11111998	T-A	Hetero	INTERGENIC
SBS	Chr1	16859770	G-T	Homo	INTERGENIC
SBS	Chr1	21269450	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g207400
SBS	Chr1	26454356	G-A	Hetero	INTRON
SBS	Chr1	29805496	G-A	Homo	INTERGENIC
SBS	Chr2	552826	C-G	Hetero	INTERGENIC
SBS	Chr2	1893669	G-T	Hetero	INTERGENIC
SBS	Chr2	19203668	T-C	Hetero	INTERGENIC
SBS	Chr2	23449799	G-A	Homo	INTRON
SBS	Chr2	30793152	C-T	Hetero	INTERGENIC
SBS	Chr3	9818600	T-A	Homo	INTERGENIC
SBS	Chr3	14862939	G-A	Hetero	INTERGENIC
SBS	Chr3	16319223	T-C	Hetero	INTERGENIC
SBS	Chr3	20437513	A-G	Hetero	INTERGENIC
SBS	Chr3	24462733	A-C	Hetero	INTERGENIC
SBS	Chr3	26211941	A-T	Hetero	INTERGENIC
SBS	Chr3	28090167	G-A	Hetero	INTERGENIC
SBS	Chr3	29093963	G-A	Hetero	INTRON
SBS	Chr3	33767175	T-C	Homo	INTERGENIC
SBS	Chr4	24168851	A-G	Hetero	INTERGENIC
SBS	Chr4	29552151	G-A	Hetero	INTERGENIC
SBS	Chr4	33726741	C-T	Hetero	INTERGENIC
SBS	Chr4	36096254	C-T	Hetero	INTERGENIC
SBS	Chr5	4768784	G-T	Homo	INTERGENIC
SBS	Chr5	6424900	T-C	Hetero	INTERGENIC
SBS	Chr5	7353186	G-A	Hetero	INTERGENIC
SBS	Chr5	10961396	C-T	Hetero	INTERGENIC
SBS	Chr5	13807735	C-T	Hetero	INTERGENIC
SBS	Chr5	17893339	T-C	Hetero	INTERGENIC
SBS	Chr5	24784085	C-A	Homo	INTERGENIC
SBS	Chr6	2209418	A-T	Homo	INTERGENIC
SBS	Chr6	8681977	G-A	Hetero	INTERGENIC
SBS	Chr6	11878754	T-A	Hetero	INTERGENIC
SBS	Chr6	18914537	C-T	Homo	INTERGENIC
SBS	Chr6	29099135	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g268500
SBS	Chr7	4558027	A-G	Hetero	INTERGENIC
SBS	Chr7	11316426	G-C	Hetero	INTERGENIC
SBS	Chr7	15772614	G-A	Hetero	INTRON
SBS	Chr7	25174983	C-T	Hetero	INTRON
SBS	Chr8	9982	G-A	Hetero	INTERGENIC
SBS	Chr8	7232371	T-C	Hetero	INTERGENIC
SBS	Chr8	8097233	A-T	Hetero	INTERGENIC
SBS	Chr8	10105034	C-T	Hetero	INTERGENIC
SBS	Chr8	10939522	A-T	Hetero	INTRON
SBS	Chr9	996418	A-G	Hetero	INTERGENIC
SBS	Chr9	3451879	C-T	Hetero	INTERGENIC
SBS	Chr9	4805287	G-T	Hetero	INTERGENIC
SBS	Chr9	9081614	G-A	Hetero	INTERGENIC
SBS	Chr9	18725819	G-A	Hetero	INTERGENIC
SBS	Chr9	20050155	G-A	Hetero	INTERGENIC
SBS	Chr10	1423822	C-T	Hetero	INTERGENIC
SBS	Chr10	1423827	C-G	Hetero	INTERGENIC
SBS	Chr10	21440815	G-A	Hetero	INTERGENIC
SBS	Chr10	22209361	A-G	Hetero	INTERGENIC
SBS	Chr11	11522354	G-A	Hetero	INTERGENIC
SBS	Chr11	12286166	T-C	Hetero	INTERGENIC
SBS	Chr11	19653389	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g153500
SBS	Chr11	24688007	A-T	Hetero	INTERGENIC
SBS	Chr12	3004473	T-C	Hetero	INTERGENIC
SBS	Chr12	4807192	G-A	Hetero	INTERGENIC
SBS	Chr12	9930230	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	377186	377200	14	OsKitaake07g003400
Deletion	Chr9	1006091	1006099	8
Deletion	Chr4	2098943	2098963	20
Deletion	Chr2	3798409	3798410	1	OsKitaake02g055000
Deletion	Chr4	6157414	6157428	14
Deletion	Chr1	9969936	9969943	7
Deletion	Chr1	10234294	10234296	2
Deletion	Chr6	10752386	10752389	3
Deletion	Chr6	10841326	10841333	7
Deletion	Chr1	13846546	13846548	2
Deletion	Chr1	13861643	13861644	1
Deletion	Chr1	14194187	14194190	3
Deletion	Chr12	17554868	17554871	3	OsKitaake12g129300
Deletion	Chr11	18977210	18977216	6
Deletion	Chr1	22874145	22874146	1
Deletion	Chr6	26526491	26526498	7
Deletion	Chr1	26832388	26832390	2
Deletion	Chr7	27428493	27428499	6	OsKitaake07g255000
Deletion	Chr11	28608425	28608439	14
Deletion	Chr6	30814001	31032000	217999	32
Deletion	Chr4	33076241	33076243	2
Deletion	Chr1	34875775	34875785	10
Deletion	Chr1	38472405	38472408	3	OsKitaake01g410900
Deletion	Chr1	40466482	40466483	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26501985	26815785
Inversion	Chr12	26639543	26815780
Inversion	Chr2	29736729	29842770	OsKitaake02g300700
Inversion	Chr2	29736730	29842777	OsKitaake02g300700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes