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Mutant Information

Mutant Name	FN2666-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2666-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 109

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1947609 C-T Hetero UTR_3_PRIME
SBS Chr1 18786836 T-A Hetero INTERGENIC
SBS Chr1 20493475 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 21025087 A-T Hetero INTERGENIC
SBS Chr1 23722351 T-G Hetero INTERGENIC
SBS Chr1 29378707 C-T Hetero UTR_3_PRIME
SBS Chr1 32963618 C-T Hetero INTRON
SBS Chr1 38600098 A-G Hetero INTRON
SBS Chr2 2945902 G-T Homo INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 21115358 G-A Homo INTERGENIC
SBS Chr3 14169772 C-T Hetero INTERGENIC
SBS Chr3 22653870 G-A Hetero INTERGENIC
SBS Chr3 24343247 G-A Hetero INTERGENIC
SBS Chr3 25504347 T-G Hetero INTRON
SBS Chr4 5187284 A-T Hetero INTERGENIC
SBS Chr4 5706188 C-A Hetero INTERGENIC
SBS Chr4 13876827 C-A Hetero INTERGENIC
SBS Chr4 16125121 A-T Homo INTERGENIC
SBS Chr4 22226687 T-A Hetero INTERGENIC
SBS Chr4 25712597 G-A Homo INTRON
SBS Chr4 30379861 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g233800
SBS Chr4 31909554 G-A Hetero INTERGENIC
SBS Chr4 33120520 C-T Hetero INTERGENIC
SBS Chr4 35001898 C-T Hetero INTERGENIC
SBS Chr5 5886237 T-G Hetero INTERGENIC
SBS Chr5 6518519 T-A Hetero INTERGENIC
SBS Chr5 11494910 T-A Homo INTERGENIC
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr6 4070083 C-T Hetero INTERGENIC
SBS Chr6 8694676 G-T Hetero INTERGENIC
SBS Chr6 9761333 G-T Hetero INTERGENIC
SBS Chr6 24319747 T-A Homo INTERGENIC
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 3187762 C-T Homo INTERGENIC
SBS Chr7 3323464 A-T Homo INTRON
SBS Chr7 10233785 T-A Homo INTERGENIC
SBS Chr7 10233786 G-A Homo INTERGENIC
SBS Chr7 10401838 C-T Hetero INTERGENIC
SBS Chr7 11439964 G-A Homo INTERGENIC
SBS Chr7 22016505 C-A Hetero INTERGENIC
SBS Chr8 2317906 T-A Hetero INTERGENIC
SBS Chr8 11205817 C-T Hetero INTERGENIC
SBS Chr8 16245201 C-G Hetero INTERGENIC
SBS Chr8 24719749 C-T Hetero INTERGENIC
SBS Chr9 600720 C-T Hetero INTERGENIC
SBS Chr9 604506 A-G Hetero INTERGENIC
SBS Chr9 2255114 C-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr9 9057866 C-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Homo INTERGENIC
SBS Chr9 15855613 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g113101
SBS Chr10 5361950 C-A Hetero INTERGENIC
SBS Chr10 9371696 C-A Hetero INTRON
SBS Chr10 13687297 C-T Hetero INTERGENIC
SBS Chr10 13837611 G-A Hetero INTERGENIC
SBS Chr11 4398379 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g058800
SBS Chr11 15413776 C-G Hetero INTERGENIC
SBS Chr11 21288575 A-T Hetero INTERGENIC
SBS Chr11 25833857 G-A Homo INTERGENIC
SBS Chr11 26988019 G-A Hetero INTERGENIC
SBS Chr11 29725923 G-A Hetero INTERGENIC
SBS Chr12 4308424 A-G Hetero INTRON
SBS Chr12 4823330 C-A Hetero INTERGENIC
SBS Chr12 21357335 C-T Hetero INTERGENIC
SBS Chr1 21025087 A-T Hetero INTERGENIC
SBS Chr1 23722351 T-G Hetero INTERGENIC
SBS Chr1 32963618 C-T Hetero INTRON
SBS Chr2 2945902 G-T Homo INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 21115358 G-A Homo INTERGENIC
SBS Chr3 14169772 C-T Hetero INTERGENIC
SBS Chr3 25504347 T-G Hetero INTRON
SBS Chr3 34073609 A-G Hetero INTERGENIC
SBS Chr4 5706188 C-A Hetero INTERGENIC
SBS Chr4 14439903 G-A Hetero INTERGENIC
SBS Chr4 16125121 A-T Homo INTERGENIC
SBS Chr4 22226687 T-A Hetero INTERGENIC
SBS Chr4 25712597 G-A Homo INTRON
SBS Chr5 5886237 T-G Hetero INTERGENIC
SBS Chr5 6518519 T-A Hetero INTERGENIC
SBS Chr5 11494910 T-A Homo INTERGENIC
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr6 4070083 C-T Hetero INTERGENIC
SBS Chr6 24319747 T-A Homo INTERGENIC
SBS Chr7 3187762 C-T Homo INTERGENIC
SBS Chr7 3323464 A-T Homo INTRON
SBS Chr7 10233785 T-A Homo INTERGENIC
SBS Chr7 10233786 G-A Homo INTERGENIC
SBS Chr7 22016505 C-A Hetero INTERGENIC
SBS Chr8 2317906 T-A Hetero INTERGENIC
SBS Chr8 3226689 T-C Hetero SYNONYMOUS_CODING
SBS Chr8 11205817 C-T Hetero INTERGENIC
SBS Chr8 16245201 C-G Hetero INTERGENIC
SBS Chr8 18810783 G-A Hetero INTERGENIC
SBS Chr9 600720 C-T Hetero INTERGENIC
SBS Chr9 604506 A-G Hetero INTERGENIC
SBS Chr9 2255114 C-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Homo INTERGENIC
SBS Chr10 5361950 C-A Hetero INTERGENIC
SBS Chr10 9371696 C-A Hetero INTRON
SBS Chr10 13837611 G-A Hetero INTERGENIC
SBS Chr10 21220121 C-T Hetero INTERGENIC
SBS Chr11 21288575 A-T Hetero INTERGENIC
SBS Chr11 26988019 G-A Hetero INTERGENIC
SBS Chr11 29725923 G-A Hetero INTERGENIC
SBS Chr12 4308424 A-G Hetero INTRON
SBS Chr12 4823330 C-A Hetero INTERGENIC
SBS Chr12 21357335 C-T Hetero INTERGENIC

Deletions: 39

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 675913 675921 8 2
Deletion Chr3 2029168 2029189 21 OsKitaake03g029000
Deletion Chr4 2957176 2957180 4
Deletion Chr3 3819895 3819901 6 2
Deletion Chr10 5064238 5064239 1
Deletion Chr8 5157873 5157874 1 2
Deletion Chr9 7120350 7120351 1 2
Deletion Chr2 8037344 8037345 1 2
Deletion Chr8 8908852 8908853 1 2
Deletion Chr5 9830995 9831003 8 2
Deletion Chr3 10914123 10914129 6
Deletion Chr12 11416321 11416329 8 2
Deletion Chr4 11442200 11442207 7
Deletion Chr7 11800179 11800188 9 2
Deletion Chr1 12899215 12899221 6
Deletion Chr1 13459001 13472000 12999 OsKitaake01g156600
Deletion Chr10 14796263 14796264 1
Deletion Chr5 15424171 15424173 2 OsKitaake05g118300
Deletion Chr4 17450622 17450626 4
Deletion Chr1 17689405 17689406 1 2
Deletion Chr4 18239578 18239580 2
Deletion Chr11 18297324 18297326 2 2
Deletion Chr1 19052801 19052804 3 2
Deletion Chr1 21009735 21009741 6
Deletion Chr1 21064595 21064598 3 2
Deletion Chr5 21097628 21097645 17 2
Deletion Chr3 21342576 21342577 1
Deletion Chr3 21926839 21926840 1
Deletion Chr6 23952387 23952392 5 2
Deletion Chr6 25484165 25484174 9 2
Deletion Chr3 26898319 26898321 2 2
Deletion Chr11 27070288 27070298 10
Deletion Chr11 27171130 27171145 15
Deletion Chr7 27656292 27656294 2 OsKitaake07g258200
Deletion Chr3 28206207 28206214 7 2
Deletion Chr11 28754471 28754472 1
Deletion Chr3 28944619 28944636 17
Deletion Chr1 29243899 29243910 11
Deletion Chr3 31485174 31485194 20 2

Insertions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4034381 4034384 2
Insertion Chr4 3522411 3522415 3
Insertion Chr4 19327669 19327676 6
Insertion Chr4 33757825 33757828 2
Insertion Chr5 22200846 22200852 5
Insertion Chr8 615099 615102 2
Insertion Chr8 4958024 4958031 6
Insertion Chr9 6300776 6300779 2
Insertion Chr9 12736075 12736078 2
Insertion Chr12 487738 487744 5
Insertion Chr3 18311423 18311426 2
Insertion Chr5 18876976 18876982 5
Insertion Chr6 18168577 18168582 4
Insertion Chr12 19747177 19747180 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17643431 18203870
Inversion Chr3 21339104 21575909
Inversion Chr3 21339116 21575912
Inversion Chr1 32550695 33127180 2
Inversion Chr1 32550698 33127194 2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1947609	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	18786836	T-A	Hetero	INTERGENIC
SBS	Chr1	20493475	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21025087	A-T	Hetero	INTERGENIC
SBS	Chr1	23722351	T-G	Hetero	INTERGENIC
SBS	Chr1	29378707	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	32963618	C-T	Hetero	INTRON
SBS	Chr1	38600098	A-G	Hetero	INTRON
SBS	Chr2	2945902	G-T	Homo	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	21115358	G-A	Homo	INTERGENIC
SBS	Chr3	14169772	C-T	Hetero	INTERGENIC
SBS	Chr3	22653870	G-A	Hetero	INTERGENIC
SBS	Chr3	24343247	G-A	Hetero	INTERGENIC
SBS	Chr3	25504347	T-G	Hetero	INTRON
SBS	Chr4	5187284	A-T	Hetero	INTERGENIC
SBS	Chr4	5706188	C-A	Hetero	INTERGENIC
SBS	Chr4	13876827	C-A	Hetero	INTERGENIC
SBS	Chr4	16125121	A-T	Homo	INTERGENIC
SBS	Chr4	22226687	T-A	Hetero	INTERGENIC
SBS	Chr4	25712597	G-A	Homo	INTRON
SBS	Chr4	30379861	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g233800
SBS	Chr4	31909554	G-A	Hetero	INTERGENIC
SBS	Chr4	33120520	C-T	Hetero	INTERGENIC
SBS	Chr4	35001898	C-T	Hetero	INTERGENIC
SBS	Chr5	5886237	T-G	Hetero	INTERGENIC
SBS	Chr5	6518519	T-A	Hetero	INTERGENIC
SBS	Chr5	11494910	T-A	Homo	INTERGENIC
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr6	4070083	C-T	Hetero	INTERGENIC
SBS	Chr6	8694676	G-T	Hetero	INTERGENIC
SBS	Chr6	9761333	G-T	Hetero	INTERGENIC
SBS	Chr6	24319747	T-A	Homo	INTERGENIC
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	3187762	C-T	Homo	INTERGENIC
SBS	Chr7	3323464	A-T	Homo	INTRON
SBS	Chr7	10233785	T-A	Homo	INTERGENIC
SBS	Chr7	10233786	G-A	Homo	INTERGENIC
SBS	Chr7	10401838	C-T	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Homo	INTERGENIC
SBS	Chr7	22016505	C-A	Hetero	INTERGENIC
SBS	Chr8	2317906	T-A	Hetero	INTERGENIC
SBS	Chr8	11205817	C-T	Hetero	INTERGENIC
SBS	Chr8	16245201	C-G	Hetero	INTERGENIC
SBS	Chr8	24719749	C-T	Hetero	INTERGENIC
SBS	Chr9	600720	C-T	Hetero	INTERGENIC
SBS	Chr9	604506	A-G	Hetero	INTERGENIC
SBS	Chr9	2255114	C-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr9	9057866	C-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Homo	INTERGENIC
SBS	Chr9	15855613	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g113101
SBS	Chr10	5361950	C-A	Hetero	INTERGENIC
SBS	Chr10	9371696	C-A	Hetero	INTRON
SBS	Chr10	13687297	C-T	Hetero	INTERGENIC
SBS	Chr10	13837611	G-A	Hetero	INTERGENIC
SBS	Chr11	4398379	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g058800
SBS	Chr11	15413776	C-G	Hetero	INTERGENIC
SBS	Chr11	21288575	A-T	Hetero	INTERGENIC
SBS	Chr11	25833857	G-A	Homo	INTERGENIC
SBS	Chr11	26988019	G-A	Hetero	INTERGENIC
SBS	Chr11	29725923	G-A	Hetero	INTERGENIC
SBS	Chr12	4308424	A-G	Hetero	INTRON
SBS	Chr12	4823330	C-A	Hetero	INTERGENIC
SBS	Chr12	21357335	C-T	Hetero	INTERGENIC
SBS	Chr1	21025087	A-T	Hetero	INTERGENIC
SBS	Chr1	23722351	T-G	Hetero	INTERGENIC
SBS	Chr1	32963618	C-T	Hetero	INTRON
SBS	Chr2	2945902	G-T	Homo	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	21115358	G-A	Homo	INTERGENIC
SBS	Chr3	14169772	C-T	Hetero	INTERGENIC
SBS	Chr3	25504347	T-G	Hetero	INTRON
SBS	Chr3	34073609	A-G	Hetero	INTERGENIC
SBS	Chr4	5706188	C-A	Hetero	INTERGENIC
SBS	Chr4	14439903	G-A	Hetero	INTERGENIC
SBS	Chr4	16125121	A-T	Homo	INTERGENIC
SBS	Chr4	22226687	T-A	Hetero	INTERGENIC
SBS	Chr4	25712597	G-A	Homo	INTRON
SBS	Chr5	5886237	T-G	Hetero	INTERGENIC
SBS	Chr5	6518519	T-A	Hetero	INTERGENIC
SBS	Chr5	11494910	T-A	Homo	INTERGENIC
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr6	4070083	C-T	Hetero	INTERGENIC
SBS	Chr6	24319747	T-A	Homo	INTERGENIC
SBS	Chr7	3187762	C-T	Homo	INTERGENIC
SBS	Chr7	3323464	A-T	Homo	INTRON
SBS	Chr7	10233785	T-A	Homo	INTERGENIC
SBS	Chr7	10233786	G-A	Homo	INTERGENIC
SBS	Chr7	22016505	C-A	Hetero	INTERGENIC
SBS	Chr8	2317906	T-A	Hetero	INTERGENIC
SBS	Chr8	3226689	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	11205817	C-T	Hetero	INTERGENIC
SBS	Chr8	16245201	C-G	Hetero	INTERGENIC
SBS	Chr8	18810783	G-A	Hetero	INTERGENIC
SBS	Chr9	600720	C-T	Hetero	INTERGENIC
SBS	Chr9	604506	A-G	Hetero	INTERGENIC
SBS	Chr9	2255114	C-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Homo	INTERGENIC
SBS	Chr10	5361950	C-A	Hetero	INTERGENIC
SBS	Chr10	9371696	C-A	Hetero	INTRON
SBS	Chr10	13837611	G-A	Hetero	INTERGENIC
SBS	Chr10	21220121	C-T	Hetero	INTERGENIC
SBS	Chr11	21288575	A-T	Hetero	INTERGENIC
SBS	Chr11	26988019	G-A	Hetero	INTERGENIC
SBS	Chr11	29725923	G-A	Hetero	INTERGENIC
SBS	Chr12	4308424	A-G	Hetero	INTRON
SBS	Chr12	4823330	C-A	Hetero	INTERGENIC
SBS	Chr12	21357335	C-T	Hetero	INTERGENIC

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes