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Mutant Information

Mutant Name	FN2676-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2676-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 64

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6598806 A-T Hetero INTRON
SBS Chr1 22938190 A-G Hetero INTERGENIC
SBS Chr1 23033690 A-C Hetero INTERGENIC
SBS Chr1 25952617 C-T Homo INTRON
SBS Chr1 26623922 G-A Hetero INTERGENIC
SBS Chr2 18086970 T-G Hetero INTERGENIC
SBS Chr2 18375598 A-T Hetero INTERGENIC
SBS Chr2 25559953 G-A Hetero INTERGENIC
SBS Chr3 1149551 G-T Hetero INTERGENIC
SBS Chr3 3165122 C-T Hetero INTERGENIC
SBS Chr3 7780621 T-A Hetero INTRON
SBS Chr3 10840410 C-G Hetero INTERGENIC
SBS Chr3 11662806 G-A Hetero INTERGENIC
SBS Chr3 20975069 C-G Hetero INTERGENIC
SBS Chr3 21082430 G-A Hetero INTERGENIC
SBS Chr3 35695586 G-A Homo INTERGENIC
SBS Chr4 7538114 A-G Hetero INTERGENIC
SBS Chr4 8196897 A-G Hetero INTERGENIC
SBS Chr4 13027834 G-A Hetero INTERGENIC
SBS Chr4 16381128 A-G Hetero INTERGENIC
SBS Chr4 16614189 C-T Hetero INTERGENIC
SBS Chr4 18454625 C-A Hetero INTERGENIC
SBS Chr4 21747117 C-T Hetero INTERGENIC
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 33992293 C-T Hetero INTERGENIC
SBS Chr4 36929401 G-A Hetero INTERGENIC
SBS Chr5 1811486 C-T Hetero INTERGENIC
SBS Chr5 5511741 G-T Hetero INTERGENIC
SBS Chr5 10924157 C-T Hetero INTERGENIC
SBS Chr5 11144998 G-T Hetero INTERGENIC
SBS Chr6 3920931 C-T Hetero INTERGENIC
SBS Chr6 4442849 T-A Homo NON_SYNONYMOUS_CODING OsKitaake06g061100
SBS Chr6 5958083 C-T Homo INTERGENIC
SBS Chr6 7717488 C-T Hetero INTERGENIC
SBS Chr6 19207246 A-G Homo INTERGENIC
SBS Chr6 23810917 C-T Hetero INTERGENIC
SBS Chr6 24190873 C-T Hetero INTERGENIC
SBS Chr6 25264081 A-G Hetero INTERGENIC
SBS Chr6 27607116 T-C Homo INTERGENIC
SBS Chr6 28690122 G-A Hetero INTERGENIC
SBS Chr7 2193953 G-T Hetero INTERGENIC
SBS Chr7 16638170 C-A Hetero INTERGENIC
SBS Chr8 2200638 C-T Hetero INTERGENIC
SBS Chr8 4953645 A-T Homo INTERGENIC
SBS Chr8 6087145 G-A Hetero INTERGENIC
SBS Chr8 7699196 G-A Hetero INTERGENIC
SBS Chr8 13971922 A-G Hetero INTRON
SBS Chr9 2854979 G-A Hetero INTERGENIC
SBS Chr9 9946522 A-G Hetero INTERGENIC
SBS Chr9 10193874 G-A Hetero INTERGENIC
SBS Chr9 14100690 T-C Hetero INTRON
SBS Chr9 14405953 T-A Hetero INTERGENIC
SBS Chr9 15984053 G-C Hetero INTERGENIC
SBS Chr9 16672806 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 17717487 C-A Hetero INTERGENIC
SBS Chr10 17125177 T-C Homo INTERGENIC
SBS Chr11 2944612 T-A Hetero INTERGENIC
SBS Chr11 19952104 G-A Hetero INTERGENIC
SBS Chr11 19964539 A-T Hetero INTERGENIC
SBS Chr11 25373258 G-A Hetero INTERGENIC
SBS Chr11 28349382 A-T Homo INTERGENIC
SBS Chr12 9769313 A-G Hetero INTERGENIC
SBS Chr12 13317647 C-T Hetero INTERGENIC
SBS Chr12 15336877 A-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 529896 529897 1
Deletion Chr10 1473901 1473902 1
Deletion Chr6 3069375 3069382 7
Deletion Chr11 3904476 3904478 2
Deletion Chr3 6726470 6726472 2
Deletion Chr6 6844560 6844565 5 OsKitaake06g088800
Deletion Chr6 7618949 7618965 16
Deletion Chr1 10307576 10307594 18
Deletion Chr7 10744162 10744172 10 OsKitaake07g102300
Deletion Chr10 12834913 12834915 2
Deletion Chr3 13457050 13457053 3
Deletion Chr8 17486419 17486421 2
Deletion Chr7 18321435 18321450 15
Deletion Chr3 18583447 18583451 4
Deletion Chr10 18859434 18859436 2
Deletion Chr4 19342246 19342256 10
Deletion Chr5 26076086 26076093 7
Deletion Chr12 26287001 26320000 32999 2
Deletion Chr12 26469001 26485000 15999 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13129988 13129991 2
Insertion Chr3 3052306 3052309 2
Insertion Chr6 5682607 5682611 3
Insertion Chr9 12635637 12635640 2
Insertion Chr10 16232133 16232136 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 9007454 9555581
Inversion Chr7 9553739 9561926
Inversion Chr6 23306333 23481737 OsKitaake06g205400
Inversion Chr6 23306340 23481736 OsKitaake06g205400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 9553748 Chr3 26400581
Translocation Chr7 9555538 Chr3 26400595
Translocation Chr9 16939953 Chr5 24198444 OsKitaake05g215400
Translocation Chr9 16940098 Chr5 24198447 OsKitaake05g215400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6598806	A-T	Hetero	INTRON
SBS	Chr1	22938190	A-G	Hetero	INTERGENIC
SBS	Chr1	23033690	A-C	Hetero	INTERGENIC
SBS	Chr1	25952617	C-T	Homo	INTRON
SBS	Chr1	26623922	G-A	Hetero	INTERGENIC
SBS	Chr2	18086970	T-G	Hetero	INTERGENIC
SBS	Chr2	18375598	A-T	Hetero	INTERGENIC
SBS	Chr2	25559953	G-A	Hetero	INTERGENIC
SBS	Chr3	1149551	G-T	Hetero	INTERGENIC
SBS	Chr3	3165122	C-T	Hetero	INTERGENIC
SBS	Chr3	7780621	T-A	Hetero	INTRON
SBS	Chr3	10840410	C-G	Hetero	INTERGENIC
SBS	Chr3	11662806	G-A	Hetero	INTERGENIC
SBS	Chr3	20975069	C-G	Hetero	INTERGENIC
SBS	Chr3	21082430	G-A	Hetero	INTERGENIC
SBS	Chr3	35695586	G-A	Homo	INTERGENIC
SBS	Chr4	7538114	A-G	Hetero	INTERGENIC
SBS	Chr4	8196897	A-G	Hetero	INTERGENIC
SBS	Chr4	13027834	G-A	Hetero	INTERGENIC
SBS	Chr4	16381128	A-G	Hetero	INTERGENIC
SBS	Chr4	16614189	C-T	Hetero	INTERGENIC
SBS	Chr4	18454625	C-A	Hetero	INTERGENIC
SBS	Chr4	21747117	C-T	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	33992293	C-T	Hetero	INTERGENIC
SBS	Chr4	36929401	G-A	Hetero	INTERGENIC
SBS	Chr5	1811486	C-T	Hetero	INTERGENIC
SBS	Chr5	5511741	G-T	Hetero	INTERGENIC
SBS	Chr5	10924157	C-T	Hetero	INTERGENIC
SBS	Chr5	11144998	G-T	Hetero	INTERGENIC
SBS	Chr6	3920931	C-T	Hetero	INTERGENIC
SBS	Chr6	4442849	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g061100
SBS	Chr6	5958083	C-T	Homo	INTERGENIC
SBS	Chr6	7717488	C-T	Hetero	INTERGENIC
SBS	Chr6	19207246	A-G	Homo	INTERGENIC
SBS	Chr6	23810917	C-T	Hetero	INTERGENIC
SBS	Chr6	24190873	C-T	Hetero	INTERGENIC
SBS	Chr6	25264081	A-G	Hetero	INTERGENIC
SBS	Chr6	27607116	T-C	Homo	INTERGENIC
SBS	Chr6	28690122	G-A	Hetero	INTERGENIC
SBS	Chr7	2193953	G-T	Hetero	INTERGENIC
SBS	Chr7	16638170	C-A	Hetero	INTERGENIC
SBS	Chr8	2200638	C-T	Hetero	INTERGENIC
SBS	Chr8	4953645	A-T	Homo	INTERGENIC
SBS	Chr8	6087145	G-A	Hetero	INTERGENIC
SBS	Chr8	7699196	G-A	Hetero	INTERGENIC
SBS	Chr8	13971922	A-G	Hetero	INTRON
SBS	Chr9	2854979	G-A	Hetero	INTERGENIC
SBS	Chr9	9946522	A-G	Hetero	INTERGENIC
SBS	Chr9	10193874	G-A	Hetero	INTERGENIC
SBS	Chr9	14100690	T-C	Hetero	INTRON
SBS	Chr9	14405953	T-A	Hetero	INTERGENIC
SBS	Chr9	15984053	G-C	Hetero	INTERGENIC
SBS	Chr9	16672806	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17717487	C-A	Hetero	INTERGENIC
SBS	Chr10	17125177	T-C	Homo	INTERGENIC
SBS	Chr11	2944612	T-A	Hetero	INTERGENIC
SBS	Chr11	19952104	G-A	Hetero	INTERGENIC
SBS	Chr11	19964539	A-T	Hetero	INTERGENIC
SBS	Chr11	25373258	G-A	Hetero	INTERGENIC
SBS	Chr11	28349382	A-T	Homo	INTERGENIC
SBS	Chr12	9769313	A-G	Hetero	INTERGENIC
SBS	Chr12	13317647	C-T	Hetero	INTERGENIC
SBS	Chr12	15336877	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	529896	529897	1
Deletion	Chr10	1473901	1473902	1
Deletion	Chr6	3069375	3069382	7
Deletion	Chr11	3904476	3904478	2
Deletion	Chr3	6726470	6726472	2
Deletion	Chr6	6844560	6844565	5	OsKitaake06g088800
Deletion	Chr6	7618949	7618965	16
Deletion	Chr1	10307576	10307594	18
Deletion	Chr7	10744162	10744172	10	OsKitaake07g102300
Deletion	Chr10	12834913	12834915	2
Deletion	Chr3	13457050	13457053	3
Deletion	Chr8	17486419	17486421	2
Deletion	Chr7	18321435	18321450	15
Deletion	Chr3	18583447	18583451	4
Deletion	Chr10	18859434	18859436	2
Deletion	Chr4	19342246	19342256	10
Deletion	Chr5	26076086	26076093	7
Deletion	Chr12	26287001	26320000	32999	2
Deletion	Chr12	26469001	26485000	15999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9007454	9555581
Inversion	Chr7	9553739	9561926
Inversion	Chr6	23306333	23481737	OsKitaake06g205400
Inversion	Chr6	23306340	23481736	OsKitaake06g205400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes