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Mutant Information

Mutant Name	FN2727-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2727-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19376271 G-A Hetero INTERGENIC
SBS Chr1 26015206 G-C Hetero INTRON
SBS Chr1 31403640 A-C Homo INTERGENIC
SBS Chr1 32848994 T-C Homo INTERGENIC
SBS Chr2 11814254 C-T Homo INTRON
SBS Chr2 17056031 G-T Homo INTERGENIC
SBS Chr2 20676107 T-A Homo INTERGENIC
SBS Chr2 21163856 T-C Hetero INTERGENIC
SBS Chr2 33222813 G-A Hetero INTERGENIC
SBS Chr3 3714208 C-T Homo INTERGENIC
SBS Chr3 11205491 G-A Homo INTRON
SBS Chr3 21797066 C-T Hetero UTR_3_PRIME
SBS Chr3 23279747 G-T Hetero UTR_5_PRIME
SBS Chr3 26768141 G-A Hetero INTERGENIC
SBS Chr3 26896128 C-A Hetero INTERGENIC
SBS Chr4 7171377 G-T Hetero INTERGENIC
SBS Chr4 9224812 C-T Hetero STOP_GAINED OsKitaake04g047400
SBS Chr4 9224813 C-T Hetero STOP_GAINED OsKitaake04g047400
SBS Chr4 10630876 G-A Hetero INTERGENIC
SBS Chr4 12925721 G-A Hetero INTERGENIC
SBS Chr4 17514397 A-T Hetero INTERGENIC
SBS Chr4 28746438 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g215500
SBS Chr4 34578258 C-T Hetero INTERGENIC
SBS Chr5 3447422 C-A Hetero INTERGENIC
SBS Chr5 17170014 C-T Homo INTERGENIC
SBS Chr5 28984583 C-A Homo INTERGENIC
SBS Chr6 10860678 C-G Homo INTERGENIC
SBS Chr6 12622228 C-T Homo INTERGENIC
SBS Chr6 25089372 T-C Homo INTERGENIC
SBS Chr7 16055012 G-A Hetero INTERGENIC
SBS Chr7 26245679 C-T Hetero INTERGENIC
SBS Chr8 1210898 G-A Hetero UTR_3_PRIME
SBS Chr9 7279361 C-T Homo INTERGENIC
SBS Chr9 11904580 G-A Hetero INTERGENIC
SBS Chr9 18368737 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g143300
SBS Chr10 6809895 G-A Homo INTERGENIC
SBS Chr10 17014229 A-G Homo INTERGENIC
SBS Chr11 7346993 C-T Hetero INTERGENIC
SBS Chr11 8516073 T-G Hetero INTERGENIC
SBS Chr11 16382412 A-G Homo INTRON
SBS Chr12 7812953 C-T Homo INTRON
SBS Chr12 9001127 G-T Homo INTERGENIC
SBS Chr12 12892410 G-A Homo INTERGENIC
SBS Chr12 19958769 G-A Hetero INTERGENIC
SBS Chr12 25094760 C-G Hetero SYNONYMOUS_CODING
SBS Chr12 26135063 T-G Hetero INTERGENIC

Deletions: 39

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1863099 1863115 16
Deletion Chr3 2034283 2034284 1
Deletion Chr6 2232640 2232645 5 OsKitaake06g028800
Deletion Chr7 2580684 2580685 1
Deletion Chr1 4530512 4530515 3
Deletion Chr1 5025038 5025040 2
Deletion Chr6 5698794 5698796 2
Deletion Chr7 6241273 6241281 8
Deletion Chr11 7436862 7436868 6
Deletion Chr2 8056139 8056152 13
Deletion Chr11 9116792 9116794 2
Deletion Chr4 9646747 9646760 13
Deletion Chr3 11214882 11214887 5
Deletion Chr12 11767631 11767636 5
Deletion Chr10 12652353 12652362 9
Deletion Chr9 13287010 13287016 6
Deletion Chr6 13487769 13487771 2
Deletion Chr12 13799001 13993000 193999 10
Deletion Chr11 15301208 15301227 19
Deletion Chr1 16829015 16829020 5
Deletion Chr5 16918958 16918961 3
Deletion Chr8 19200787 19200791 4
Deletion Chr1 19296983 19297001 18 OsKitaake01g192900
Deletion Chr9 19558686 19558688 2
Deletion Chr4 19891444 19891445 1
Deletion Chr5 20245478 20245481 3 OsKitaake05g161200
Deletion Chr8 20549707 20549708 1
Deletion Chr12 20734708 20734710 2
Deletion Chr8 20998319 20998333 14
Deletion Chr9 21765001 21881000 115999 17
Deletion Chr5 25234438 25234468 30
Deletion Chr3 26112488 26112493 5
Deletion Chr4 26265761 26265770 9
Deletion Chr8 27349819 27349820 1
Deletion Chr2 29290848 29290850 2
Deletion Chr1 31009744 31009745 1
Deletion Chr1 40441480 40441492 12
Deletion Chr1 41069888 41069893 5
Deletion Chr1 42610001 42632000 21999 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39652502 39652505 2
Insertion Chr2 17175621 17175624 2
Insertion Chr10 19277237 19277242 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5561021 5892678
Inversion Chr7 5561033 5892691
Inversion Chr12 13438217 13799127 OsKitaake12g111400
Inversion Chr12 13438235 13993470 OsKitaake12g111400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 5243205 Chr1 5591838
Translocation Chr9 15673582 Chr7 10195157
Translocation Chr9 15673588 Chr7 10194746

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19376271	G-A	Hetero	INTERGENIC
SBS	Chr1	26015206	G-C	Hetero	INTRON
SBS	Chr1	31403640	A-C	Homo	INTERGENIC
SBS	Chr1	32848994	T-C	Homo	INTERGENIC
SBS	Chr2	11814254	C-T	Homo	INTRON
SBS	Chr2	17056031	G-T	Homo	INTERGENIC
SBS	Chr2	20676107	T-A	Homo	INTERGENIC
SBS	Chr2	21163856	T-C	Hetero	INTERGENIC
SBS	Chr2	33222813	G-A	Hetero	INTERGENIC
SBS	Chr3	3714208	C-T	Homo	INTERGENIC
SBS	Chr3	11205491	G-A	Homo	INTRON
SBS	Chr3	21797066	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	23279747	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	26768141	G-A	Hetero	INTERGENIC
SBS	Chr3	26896128	C-A	Hetero	INTERGENIC
SBS	Chr4	7171377	G-T	Hetero	INTERGENIC
SBS	Chr4	9224812	C-T	Hetero	STOP_GAINED	OsKitaake04g047400
SBS	Chr4	9224813	C-T	Hetero	STOP_GAINED	OsKitaake04g047400
SBS	Chr4	10630876	G-A	Hetero	INTERGENIC
SBS	Chr4	12925721	G-A	Hetero	INTERGENIC
SBS	Chr4	17514397	A-T	Hetero	INTERGENIC
SBS	Chr4	28746438	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g215500
SBS	Chr4	34578258	C-T	Hetero	INTERGENIC
SBS	Chr5	3447422	C-A	Hetero	INTERGENIC
SBS	Chr5	17170014	C-T	Homo	INTERGENIC
SBS	Chr5	28984583	C-A	Homo	INTERGENIC
SBS	Chr6	10860678	C-G	Homo	INTERGENIC
SBS	Chr6	12622228	C-T	Homo	INTERGENIC
SBS	Chr6	25089372	T-C	Homo	INTERGENIC
SBS	Chr7	16055012	G-A	Hetero	INTERGENIC
SBS	Chr7	26245679	C-T	Hetero	INTERGENIC
SBS	Chr8	1210898	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	7279361	C-T	Homo	INTERGENIC
SBS	Chr9	11904580	G-A	Hetero	INTERGENIC
SBS	Chr9	18368737	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g143300
SBS	Chr10	6809895	G-A	Homo	INTERGENIC
SBS	Chr10	17014229	A-G	Homo	INTERGENIC
SBS	Chr11	7346993	C-T	Hetero	INTERGENIC
SBS	Chr11	8516073	T-G	Hetero	INTERGENIC
SBS	Chr11	16382412	A-G	Homo	INTRON
SBS	Chr12	7812953	C-T	Homo	INTRON
SBS	Chr12	9001127	G-T	Homo	INTERGENIC
SBS	Chr12	12892410	G-A	Homo	INTERGENIC
SBS	Chr12	19958769	G-A	Hetero	INTERGENIC
SBS	Chr12	25094760	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	26135063	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1863099	1863115	16
Deletion	Chr3	2034283	2034284	1
Deletion	Chr6	2232640	2232645	5	OsKitaake06g028800
Deletion	Chr7	2580684	2580685	1
Deletion	Chr1	4530512	4530515	3
Deletion	Chr1	5025038	5025040	2
Deletion	Chr6	5698794	5698796	2
Deletion	Chr7	6241273	6241281	8
Deletion	Chr11	7436862	7436868	6
Deletion	Chr2	8056139	8056152	13
Deletion	Chr11	9116792	9116794	2
Deletion	Chr4	9646747	9646760	13
Deletion	Chr3	11214882	11214887	5
Deletion	Chr12	11767631	11767636	5
Deletion	Chr10	12652353	12652362	9
Deletion	Chr9	13287010	13287016	6
Deletion	Chr6	13487769	13487771	2
Deletion	Chr12	13799001	13993000	193999	10
Deletion	Chr11	15301208	15301227	19
Deletion	Chr1	16829015	16829020	5
Deletion	Chr5	16918958	16918961	3
Deletion	Chr8	19200787	19200791	4
Deletion	Chr1	19296983	19297001	18	OsKitaake01g192900
Deletion	Chr9	19558686	19558688	2
Deletion	Chr4	19891444	19891445	1
Deletion	Chr5	20245478	20245481	3	OsKitaake05g161200
Deletion	Chr8	20549707	20549708	1
Deletion	Chr12	20734708	20734710	2
Deletion	Chr8	20998319	20998333	14
Deletion	Chr9	21765001	21881000	115999	17
Deletion	Chr5	25234438	25234468	30
Deletion	Chr3	26112488	26112493	5
Deletion	Chr4	26265761	26265770	9
Deletion	Chr8	27349819	27349820	1
Deletion	Chr2	29290848	29290850	2
Deletion	Chr1	31009744	31009745	1
Deletion	Chr1	40441480	40441492	12
Deletion	Chr1	41069888	41069893	5
Deletion	Chr1	42610001	42632000	21999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5561021	5892678
Inversion	Chr7	5561033	5892691
Inversion	Chr12	13438217	13799127	OsKitaake12g111400
Inversion	Chr12	13438235	13993470	OsKitaake12g111400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes