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Mutant Information

Mutant Name	FN2749-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2749-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8975929 T-A Hetero INTERGENIC
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 35299482 G-A Hetero INTERGENIC
SBS Chr1 38573116 G-A Hetero INTERGENIC
SBS Chr2 1357019 G-A Hetero INTERGENIC
SBS Chr2 1873013 A-T Homo INTERGENIC
SBS Chr2 6084839 C-A Hetero INTERGENIC
SBS Chr2 24286094 C-T Homo INTERGENIC
SBS Chr2 28255013 G-C Hetero INTERGENIC
SBS Chr3 4869433 C-A Homo INTERGENIC
SBS Chr3 16443733 A-G Hetero INTERGENIC
SBS Chr3 32420576 G-A Hetero INTERGENIC
SBS Chr3 34245310 G-T Hetero INTERGENIC
SBS Chr4 4659628 C-T Homo INTERGENIC
SBS Chr4 7480278 G-T Hetero INTERGENIC
SBS Chr4 10132201 G-T Hetero INTERGENIC
SBS Chr4 14908611 G-A Hetero INTERGENIC
SBS Chr4 16286600 C-A Hetero INTERGENIC
SBS Chr4 19281025 A-C Homo INTERGENIC
SBS Chr4 28726237 G-T Hetero INTERGENIC
SBS Chr4 29517344 A-G Hetero INTERGENIC
SBS Chr4 35908771 A-T Hetero INTRON
SBS Chr5 8920595 G-A Hetero INTERGENIC
SBS Chr5 14493252 A-T Homo INTERGENIC
SBS Chr5 16024522 G-T Homo INTERGENIC
SBS Chr5 18167672 T-C Hetero INTERGENIC
SBS Chr5 20610674 T-A Hetero INTERGENIC
SBS Chr5 20916175 C-T Hetero INTERGENIC
SBS Chr5 25097001 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g218428
SBS Chr6 17668443 C-G Hetero INTERGENIC
SBS Chr6 18234249 C-A Hetero INTERGENIC
SBS Chr7 9394191 A-G Hetero INTRON
SBS Chr7 9394192 G-A Hetero INTRON
SBS Chr8 8581098 G-A Hetero INTERGENIC
SBS Chr8 8988984 G-A Hetero INTERGENIC
SBS Chr8 20469084 T-C Homo INTERGENIC
SBS Chr9 2104205 G-A Hetero INTERGENIC
SBS Chr9 13226139 C-A Hetero INTERGENIC
SBS Chr9 18782856 G-T Hetero INTERGENIC
SBS Chr9 19112572 A-G Hetero INTERGENIC
SBS Chr10 7206152 G-A Hetero INTERGENIC
SBS Chr10 7268759 C-G Hetero INTERGENIC
SBS Chr10 7610227 C-T Hetero INTERGENIC
SBS Chr10 10223604 G-A Hetero INTERGENIC
SBS Chr10 13155361 C-T Hetero INTERGENIC
SBS Chr10 22255811 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g181800
SBS Chr10 23658963 T-C Hetero INTRON
SBS Chr11 1469317 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 4431685 T-G Hetero INTERGENIC
SBS Chr11 9697646 C-A Hetero INTERGENIC
SBS Chr11 20243153 C-A Hetero INTERGENIC
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr11 24868542 T-A Hetero INTERGENIC
SBS Chr12 49914 C-T Hetero INTERGENIC
SBS Chr12 4952343 G-A Hetero INTERGENIC
SBS Chr12 12976619 T-C Hetero INTERGENIC
SBS Chr12 19503843 C-G Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 6973001 7062000 88999 6
Deletion Chr2 21505344 21505356 12
Deletion Chr3 26622045 26622049 4
Deletion Chr11 27541328 27541398 70
Deletion Chr3 28689651 28689655 4
Deletion Chr3 29004533 29004554 21
Deletion Chr5 30230033 30230034 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30372022 30372025 2
Insertion Chr7 1453276 1453279 2
Insertion Chr10 4638456 4638459 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6904649 7028858
Inversion Chr7 6904652 7028869

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 24690886 Chr4 26380991 2
Translocation Chr4 26380408 Chr1 5615624 OsKitaake04g188700
Translocation Chr4 26381429 Chr3 23868614 OsKitaake04g188700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8975929	T-A	Hetero	INTERGENIC
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	35299482	G-A	Hetero	INTERGENIC
SBS	Chr1	38573116	G-A	Hetero	INTERGENIC
SBS	Chr2	1357019	G-A	Hetero	INTERGENIC
SBS	Chr2	1873013	A-T	Homo	INTERGENIC
SBS	Chr2	6084839	C-A	Hetero	INTERGENIC
SBS	Chr2	24286094	C-T	Homo	INTERGENIC
SBS	Chr2	28255013	G-C	Hetero	INTERGENIC
SBS	Chr3	4869433	C-A	Homo	INTERGENIC
SBS	Chr3	16443733	A-G	Hetero	INTERGENIC
SBS	Chr3	32420576	G-A	Hetero	INTERGENIC
SBS	Chr3	34245310	G-T	Hetero	INTERGENIC
SBS	Chr4	4659628	C-T	Homo	INTERGENIC
SBS	Chr4	7480278	G-T	Hetero	INTERGENIC
SBS	Chr4	10132201	G-T	Hetero	INTERGENIC
SBS	Chr4	14908611	G-A	Hetero	INTERGENIC
SBS	Chr4	16286600	C-A	Hetero	INTERGENIC
SBS	Chr4	19281025	A-C	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Hetero	INTERGENIC
SBS	Chr4	29517344	A-G	Hetero	INTERGENIC
SBS	Chr4	35908771	A-T	Hetero	INTRON
SBS	Chr5	8920595	G-A	Hetero	INTERGENIC
SBS	Chr5	14493252	A-T	Homo	INTERGENIC
SBS	Chr5	16024522	G-T	Homo	INTERGENIC
SBS	Chr5	18167672	T-C	Hetero	INTERGENIC
SBS	Chr5	20610674	T-A	Hetero	INTERGENIC
SBS	Chr5	20916175	C-T	Hetero	INTERGENIC
SBS	Chr5	25097001	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g218428
SBS	Chr6	17668443	C-G	Hetero	INTERGENIC
SBS	Chr6	18234249	C-A	Hetero	INTERGENIC
SBS	Chr7	9394191	A-G	Hetero	INTRON
SBS	Chr7	9394192	G-A	Hetero	INTRON
SBS	Chr8	8581098	G-A	Hetero	INTERGENIC
SBS	Chr8	8988984	G-A	Hetero	INTERGENIC
SBS	Chr8	20469084	T-C	Homo	INTERGENIC
SBS	Chr9	2104205	G-A	Hetero	INTERGENIC
SBS	Chr9	13226139	C-A	Hetero	INTERGENIC
SBS	Chr9	18782856	G-T	Hetero	INTERGENIC
SBS	Chr9	19112572	A-G	Hetero	INTERGENIC
SBS	Chr10	7206152	G-A	Hetero	INTERGENIC
SBS	Chr10	7268759	C-G	Hetero	INTERGENIC
SBS	Chr10	7610227	C-T	Hetero	INTERGENIC
SBS	Chr10	10223604	G-A	Hetero	INTERGENIC
SBS	Chr10	13155361	C-T	Hetero	INTERGENIC
SBS	Chr10	22255811	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g181800
SBS	Chr10	23658963	T-C	Hetero	INTRON
SBS	Chr11	1469317	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	4431685	T-G	Hetero	INTERGENIC
SBS	Chr11	9697646	C-A	Hetero	INTERGENIC
SBS	Chr11	20243153	C-A	Hetero	INTERGENIC
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr11	24868542	T-A	Hetero	INTERGENIC
SBS	Chr12	49914	C-T	Hetero	INTERGENIC
SBS	Chr12	4952343	G-A	Hetero	INTERGENIC
SBS	Chr12	12976619	T-C	Hetero	INTERGENIC
SBS	Chr12	19503843	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	6973001	7062000	88999	6
Deletion	Chr2	21505344	21505356	12
Deletion	Chr3	26622045	26622049	4
Deletion	Chr11	27541328	27541398	70
Deletion	Chr3	28689651	28689655	4
Deletion	Chr3	29004533	29004554	21
Deletion	Chr5	30230033	30230034	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6904649	7028858
Inversion	Chr7	6904652	7028869

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes