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Mutant Information

Mutant Name	FN282-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN282-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10296586 A-T Homo INTERGENIC
SBS Chr1 11002258 A-G Hetero SPLICE_SITE_REGION
SBS Chr1 14047444 G-A Hetero INTERGENIC
SBS Chr1 40221249 C-A Hetero INTERGENIC
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 15315719 T-C Hetero INTERGENIC
SBS Chr2 18652332 T-C Hetero INTERGENIC
SBS Chr2 18946683 A-T Hetero INTERGENIC
SBS Chr2 23667745 T-A Hetero INTRON
SBS Chr3 10240938 C-T Homo INTERGENIC
SBS Chr3 21370736 G-A Homo INTERGENIC
SBS Chr4 8004736 G-A Homo INTERGENIC
SBS Chr5 20598714 C-A Hetero INTRON
SBS Chr5 24277416 C-T Homo INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 29605310 C-T Hetero INTERGENIC
SBS Chr6 31016921 C-T Homo INTRON
SBS Chr7 13008385 G-A Hetero INTERGENIC
SBS Chr7 23263467 A-T Hetero INTERGENIC
SBS Chr8 19428826 A-T Homo INTERGENIC
SBS Chr9 4001072 C-T Hetero INTERGENIC
SBS Chr10 11764093 T-A Hetero INTERGENIC
SBS Chr12 1924091 A-T Hetero INTERGENIC
SBS Chr12 6397417 C-T Homo INTERGENIC
SBS Chr12 15130261 A-G Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6526827 6526828 1
Deletion Chr12 6784298 6784302 4
Deletion Chr6 8818892 8818897 5
Deletion Chr8 12332001 12341000 8999
Deletion Chr1 13181001 13372000 190999 5
Deletion Chr2 13837961 13837963 2
Deletion Chr12 16679897 16679913 16
Deletion Chr6 17707646 17707648 2
Deletion Chr1 18744061 18744068 7
Deletion Chr10 19984676 19984680 4
Deletion Chr3 25935725 25935871 146
Deletion Chr7 28376535 28376536 1
Deletion Chr6 31005265 31005271 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6796016 6796019 2
Insertion Chr12 6580688 6580691 2
Insertion Chr4 2898788 2898791 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 8821442 9310961
Inversion Chr4 8884920 8917498
Inversion Chr8 12331926 13111182 OsKitaake08g109500
Inversion Chr12 15157248 15893062
Inversion Chr12 15157250 15893065
Inversion Chr3 35513690 35545626 OsKitaake03g389700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12340880 Chr3 12275152 OsKitaake03g165700
Translocation Chr3 35516540 Chr2 23130856 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10296586	A-T	Homo	INTERGENIC
SBS	Chr1	11002258	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr1	14047444	G-A	Hetero	INTERGENIC
SBS	Chr1	40221249	C-A	Hetero	INTERGENIC
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	15315719	T-C	Hetero	INTERGENIC
SBS	Chr2	18652332	T-C	Hetero	INTERGENIC
SBS	Chr2	18946683	A-T	Hetero	INTERGENIC
SBS	Chr2	23667745	T-A	Hetero	INTRON
SBS	Chr3	10240938	C-T	Homo	INTERGENIC
SBS	Chr3	21370736	G-A	Homo	INTERGENIC
SBS	Chr4	8004736	G-A	Homo	INTERGENIC
SBS	Chr5	20598714	C-A	Hetero	INTRON
SBS	Chr5	24277416	C-T	Homo	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	29605310	C-T	Hetero	INTERGENIC
SBS	Chr6	31016921	C-T	Homo	INTRON
SBS	Chr7	13008385	G-A	Hetero	INTERGENIC
SBS	Chr7	23263467	A-T	Hetero	INTERGENIC
SBS	Chr8	19428826	A-T	Homo	INTERGENIC
SBS	Chr9	4001072	C-T	Hetero	INTERGENIC
SBS	Chr10	11764093	T-A	Hetero	INTERGENIC
SBS	Chr12	1924091	A-T	Hetero	INTERGENIC
SBS	Chr12	6397417	C-T	Homo	INTERGENIC
SBS	Chr12	15130261	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6526827	6526828	1
Deletion	Chr12	6784298	6784302	4
Deletion	Chr6	8818892	8818897	5
Deletion	Chr8	12332001	12341000	8999
Deletion	Chr1	13181001	13372000	190999	5
Deletion	Chr2	13837961	13837963	2
Deletion	Chr12	16679897	16679913	16
Deletion	Chr6	17707646	17707648	2
Deletion	Chr1	18744061	18744068	7
Deletion	Chr10	19984676	19984680	4
Deletion	Chr3	25935725	25935871	146
Deletion	Chr7	28376535	28376536	1
Deletion	Chr6	31005265	31005271	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	8821442	9310961
Inversion	Chr4	8884920	8917498
Inversion	Chr8	12331926	13111182	OsKitaake08g109500
Inversion	Chr12	15157248	15893062
Inversion	Chr12	15157250	15893065
Inversion	Chr3	35513690	35545626	OsKitaake03g389700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes