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Mutant Information

Mutant Name	FN2973-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2973-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8092587 C-A Hetero INTERGENIC
SBS Chr1 13750853 C-G Hetero INTRON
SBS Chr1 24406781 T-A Homo INTERGENIC
SBS Chr1 25528998 G-A Homo INTERGENIC
SBS Chr1 33820954 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g347600
SBS Chr1 38835219 C-T Homo INTERGENIC
SBS Chr2 6459014 A-T Hetero INTERGENIC
SBS Chr2 6494117 G-T Homo UTR_3_PRIME
SBS Chr2 10823712 T-C Hetero INTRON
SBS Chr2 11324857 C-G Hetero INTERGENIC
SBS Chr2 32792854 T-C Hetero INTERGENIC
SBS Chr3 14493504 A-T Hetero INTRON
SBS Chr3 18869601 T-C Hetero INTERGENIC
SBS Chr3 27424486 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g283050
SBS Chr4 4482209 G-T Hetero INTERGENIC
SBS Chr4 19086525 A-G Hetero INTERGENIC
SBS Chr5 10720903 G-A Hetero INTERGENIC
SBS Chr5 12003839 A-C Homo INTERGENIC
SBS Chr5 20461219 T-A Hetero INTERGENIC
SBS Chr5 20461220 G-A Hetero INTERGENIC
SBS Chr5 26506668 G-C Hetero INTERGENIC
SBS Chr5 27166594 C-T Homo INTERGENIC
SBS Chr6 4391221 A-T Hetero INTERGENIC
SBS Chr6 5201318 G-A Homo INTRON
SBS Chr6 8102596 C-T Hetero INTERGENIC
SBS Chr6 8438099 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 9773949 G-T Hetero INTERGENIC
SBS Chr6 14052428 G-A Hetero INTERGENIC
SBS Chr6 19277826 T-C Hetero INTERGENIC
SBS Chr6 22909403 C-T Hetero INTERGENIC
SBS Chr6 23181449 A-T Hetero INTERGENIC
SBS Chr6 24554856 G-A Hetero UTR_5_PRIME
SBS Chr6 26203225 C-T Hetero INTERGENIC
SBS Chr7 14009 T-C Hetero INTERGENIC
SBS Chr7 1509474 C-G Hetero INTERGENIC
SBS Chr7 11476499 C-T Hetero INTERGENIC
SBS Chr7 12455001 A-G Hetero INTERGENIC
SBS Chr7 13045017 G-C Hetero INTERGENIC
SBS Chr7 24715331 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g220200
SBS Chr7 26536512 G-A Hetero INTERGENIC
SBS Chr7 29583847 G-A Hetero INTERGENIC
SBS Chr8 2588097 G-A Hetero INTERGENIC
SBS Chr8 3912519 T-C Hetero INTERGENIC
SBS Chr8 4052319 C-T Homo INTERGENIC
SBS Chr8 10500239 C-A Hetero INTRON
SBS Chr8 11414320 C-T Hetero INTERGENIC
SBS Chr8 24763084 G-T Hetero INTRON
SBS Chr9 11198577 G-A Hetero INTRON
SBS Chr10 12663515 G-T Hetero INTERGENIC
SBS Chr11 774118 C-T Homo INTRON
SBS Chr11 4301954 C-T Hetero INTERGENIC
SBS Chr11 4862980 C-T Hetero INTERGENIC
SBS Chr11 4922433 C-A Hetero INTERGENIC
SBS Chr11 7825797 G-A Hetero INTERGENIC
SBS Chr11 26861415 C-G Hetero INTERGENIC
SBS Chr11 27109936 A-G Hetero INTERGENIC
SBS Chr12 5291650 G-A Hetero INTERGENIC
SBS Chr12 8245978 G-A Hetero INTERGENIC
SBS Chr12 15784554 C-T Hetero INTERGENIC
SBS Chr12 21774738 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4412468 4412470 2
Deletion Chr4 5873150 5873153 3
Deletion Chr6 6234281 6234284 3
Deletion Chr6 12655479 12655480 1
Deletion Chr12 12862936 12862937 1
Deletion Chr10 13525053 13525055 2
Deletion Chr12 15820056 15820062 6 OsKitaake12g121900
Deletion Chr1 17743181 17743186 5
Deletion Chr7 18471356 18471368 12
Deletion Chr11 18952808 18952811 3
Deletion Chr5 20438921 20438931 10
Deletion Chr2 20798001 20912000 113999 12
Deletion Chr6 21909856 21909870 14
Deletion Chr7 22614964 22614974 10
Deletion Chr11 24537871 24537872 1
Deletion Chr7 27288616 27288632 16
Deletion Chr7 27606007 27606013 6
Deletion Chr6 28014211 28014213 2
Deletion Chr6 28478440 28478454 14
Deletion Chr5 30212669 30212670 1
Deletion Chr1 33450557 33450564 7
Deletion Chr3 36094183 36094185 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6892265 6892269 3
Insertion Chr5 29314935 29314938 2
Insertion Chr8 26682322 26682325 2
Insertion Chr12 10016519 10016523 3
Insertion Chr8 22823116 22823118 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 32445275 33292366 OsKitaake02g342900
Inversion Chr2 32445279 33292368 OsKitaake02g342900
Inversion Chr1 38765819 38939613 2
Inversion Chr1 38765824 38939613 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 15651301 Chr2 15979486 OsKitaake02g165700
Translocation Chr11 15651620 Chr2 15979484 2
Translocation Chr12 16832296 Chr4 28956714
Translocation Chr12 16832531 Chr4 28956704
Translocation Chr7 18023088 Chr4 135631

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8092587	C-A	Hetero	INTERGENIC
SBS	Chr1	13750853	C-G	Hetero	INTRON
SBS	Chr1	24406781	T-A	Homo	INTERGENIC
SBS	Chr1	25528998	G-A	Homo	INTERGENIC
SBS	Chr1	33820954	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g347600
SBS	Chr1	38835219	C-T	Homo	INTERGENIC
SBS	Chr2	6459014	A-T	Hetero	INTERGENIC
SBS	Chr2	6494117	G-T	Homo	UTR_3_PRIME
SBS	Chr2	10823712	T-C	Hetero	INTRON
SBS	Chr2	11324857	C-G	Hetero	INTERGENIC
SBS	Chr2	32792854	T-C	Hetero	INTERGENIC
SBS	Chr3	14493504	A-T	Hetero	INTRON
SBS	Chr3	18869601	T-C	Hetero	INTERGENIC
SBS	Chr3	27424486	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g283050
SBS	Chr4	4482209	G-T	Hetero	INTERGENIC
SBS	Chr4	19086525	A-G	Hetero	INTERGENIC
SBS	Chr5	10720903	G-A	Hetero	INTERGENIC
SBS	Chr5	12003839	A-C	Homo	INTERGENIC
SBS	Chr5	20461219	T-A	Hetero	INTERGENIC
SBS	Chr5	20461220	G-A	Hetero	INTERGENIC
SBS	Chr5	26506668	G-C	Hetero	INTERGENIC
SBS	Chr5	27166594	C-T	Homo	INTERGENIC
SBS	Chr6	4391221	A-T	Hetero	INTERGENIC
SBS	Chr6	5201318	G-A	Homo	INTRON
SBS	Chr6	8102596	C-T	Hetero	INTERGENIC
SBS	Chr6	8438099	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	9773949	G-T	Hetero	INTERGENIC
SBS	Chr6	14052428	G-A	Hetero	INTERGENIC
SBS	Chr6	19277826	T-C	Hetero	INTERGENIC
SBS	Chr6	22909403	C-T	Hetero	INTERGENIC
SBS	Chr6	23181449	A-T	Hetero	INTERGENIC
SBS	Chr6	24554856	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	26203225	C-T	Hetero	INTERGENIC
SBS	Chr7	14009	T-C	Hetero	INTERGENIC
SBS	Chr7	1509474	C-G	Hetero	INTERGENIC
SBS	Chr7	11476499	C-T	Hetero	INTERGENIC
SBS	Chr7	12455001	A-G	Hetero	INTERGENIC
SBS	Chr7	13045017	G-C	Hetero	INTERGENIC
SBS	Chr7	24715331	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g220200
SBS	Chr7	26536512	G-A	Hetero	INTERGENIC
SBS	Chr7	29583847	G-A	Hetero	INTERGENIC
SBS	Chr8	2588097	G-A	Hetero	INTERGENIC
SBS	Chr8	3912519	T-C	Hetero	INTERGENIC
SBS	Chr8	4052319	C-T	Homo	INTERGENIC
SBS	Chr8	10500239	C-A	Hetero	INTRON
SBS	Chr8	11414320	C-T	Hetero	INTERGENIC
SBS	Chr8	24763084	G-T	Hetero	INTRON
SBS	Chr9	11198577	G-A	Hetero	INTRON
SBS	Chr10	12663515	G-T	Hetero	INTERGENIC
SBS	Chr11	774118	C-T	Homo	INTRON
SBS	Chr11	4301954	C-T	Hetero	INTERGENIC
SBS	Chr11	4862980	C-T	Hetero	INTERGENIC
SBS	Chr11	4922433	C-A	Hetero	INTERGENIC
SBS	Chr11	7825797	G-A	Hetero	INTERGENIC
SBS	Chr11	26861415	C-G	Hetero	INTERGENIC
SBS	Chr11	27109936	A-G	Hetero	INTERGENIC
SBS	Chr12	5291650	G-A	Hetero	INTERGENIC
SBS	Chr12	8245978	G-A	Hetero	INTERGENIC
SBS	Chr12	15784554	C-T	Hetero	INTERGENIC
SBS	Chr12	21774738	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4412468	4412470	2
Deletion	Chr4	5873150	5873153	3
Deletion	Chr6	6234281	6234284	3
Deletion	Chr6	12655479	12655480	1
Deletion	Chr12	12862936	12862937	1
Deletion	Chr10	13525053	13525055	2
Deletion	Chr12	15820056	15820062	6	OsKitaake12g121900
Deletion	Chr1	17743181	17743186	5
Deletion	Chr7	18471356	18471368	12
Deletion	Chr11	18952808	18952811	3
Deletion	Chr5	20438921	20438931	10
Deletion	Chr2	20798001	20912000	113999	12
Deletion	Chr6	21909856	21909870	14
Deletion	Chr7	22614964	22614974	10
Deletion	Chr11	24537871	24537872	1
Deletion	Chr7	27288616	27288632	16
Deletion	Chr7	27606007	27606013	6
Deletion	Chr6	28014211	28014213	2
Deletion	Chr6	28478440	28478454	14
Deletion	Chr5	30212669	30212670	1
Deletion	Chr1	33450557	33450564	7
Deletion	Chr3	36094183	36094185	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32445275	33292366	OsKitaake02g342900
Inversion	Chr2	32445279	33292368	OsKitaake02g342900
Inversion	Chr1	38765819	38939613	2
Inversion	Chr1	38765824	38939613	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes