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Mutant Information

Mutant Name	FN3057-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3057-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5657460 C-G Hetero INTRON
SBS Chr1 14825672 G-A Homo INTERGENIC
SBS Chr1 20177115 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g198650
SBS Chr1 27945045 T-A Hetero INTERGENIC
SBS Chr1 28740718 C-A Hetero INTERGENIC
SBS Chr1 30568648 G-C Hetero INTRON
SBS Chr1 39799491 C-G Hetero UTR_3_PRIME
SBS Chr2 3601654 C-T Hetero INTRON
SBS Chr2 3629388 G-T Hetero INTERGENIC
SBS Chr2 31119237 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g317900
SBS Chr3 16998081 G-A Hetero UTR_3_PRIME
SBS Chr3 22649496 G-A Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr5 13790759 T-C Hetero INTERGENIC
SBS Chr5 20541119 C-T Hetero INTRON
SBS Chr6 14897559 C-G Homo INTERGENIC
SBS Chr6 28286733 A-G Hetero INTERGENIC
SBS Chr7 1500322 G-A Hetero INTERGENIC
SBS Chr7 2285413 G-A Hetero INTERGENIC
SBS Chr7 2285414 G-A Hetero INTERGENIC
SBS Chr7 10645721 G-A Homo INTERGENIC
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 20512296 G-T Hetero INTRON
SBS Chr8 331465 G-A Hetero UTR_5_PRIME
SBS Chr8 2033927 G-C Hetero INTERGENIC
SBS Chr8 5957922 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g064600
SBS Chr8 6339257 G-A Hetero INTERGENIC
SBS Chr8 8583382 C-A Hetero INTERGENIC
SBS Chr8 12464931 C-T Hetero INTERGENIC
SBS Chr8 14122510 T-C Hetero INTRON
SBS Chr8 25667308 A-T Hetero INTERGENIC
SBS Chr8 27795055 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g229500
SBS Chr9 3907507 C-T Hetero INTERGENIC
SBS Chr9 5056838 A-G Hetero INTERGENIC
SBS Chr10 613759 G-T Hetero INTERGENIC
SBS Chr10 2361583 C-A Hetero UTR_3_PRIME
SBS Chr10 4554827 T-G Hetero INTRON
SBS Chr10 8049891 G-A Hetero INTERGENIC
SBS Chr10 9681171 C-A Hetero INTERGENIC
SBS Chr10 10145046 A-G Hetero INTERGENIC
SBS Chr11 18922717 G-T Homo INTERGENIC
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr12 714517 G-A Hetero INTERGENIC
SBS Chr12 7719552 G-A Hetero INTERGENIC
SBS Chr12 7929196 A-G Hetero INTERGENIC
SBS Chr12 16830191 G-A Hetero INTERGENIC
SBS Chr12 16830827 G-T Hetero INTERGENIC
SBS Chr12 17659701 G-A Hetero INTRON
SBS Chr12 24697329 C-T Hetero INTERGENIC
SBS Chr12 24697330 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1569745 1569747 2
Deletion Chr1 2279800 2279805 5
Deletion Chr7 4002001 4026000 23999 3
Deletion Chr9 4338001 4378000 39999 4
Deletion Chr2 4895210 4895212 2
Deletion Chr5 8334613 8334615 2
Deletion Chr7 10976630 10976635 5
Deletion Chr4 13192567 13192569 2
Deletion Chr7 14992187 14992195 8
Deletion Chr6 16863001 16875000 11999 2
Deletion Chr3 18328001 18446000 117999 9
Deletion Chr2 18384413 18384424 11
Deletion Chr3 18450001 18767000 316999 23
Deletion Chr1 22900776 22900788 12
Deletion Chr1 27082062 27082064 2
Deletion Chr2 27791231 27791232 1 OsKitaake02g279400
Deletion Chr2 28735730 28735736 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 3661025 3661028 2
Insertion Chr5 14569030 14569033 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 4287638 4398514 OsKitaake09g023300
Inversion Chr9 4287644 4379688 OsKitaake09g023300
Inversion Chr9 4338205 5053489
Inversion Chr9 5053493 5914552
Inversion Chr6 20930675 20945094
Inversion Chr6 20930683 20945095

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5822592 Chr3 16982926 OsKitaake03g211600
Translocation Chr8 5823128 Chr3 18768807 OsKitaake03g225900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5657460	C-G	Hetero	INTRON
SBS	Chr1	14825672	G-A	Homo	INTERGENIC
SBS	Chr1	20177115	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g198650
SBS	Chr1	27945045	T-A	Hetero	INTERGENIC
SBS	Chr1	28740718	C-A	Hetero	INTERGENIC
SBS	Chr1	30568648	G-C	Hetero	INTRON
SBS	Chr1	39799491	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	3601654	C-T	Hetero	INTRON
SBS	Chr2	3629388	G-T	Hetero	INTERGENIC
SBS	Chr2	31119237	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g317900
SBS	Chr3	16998081	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	22649496	G-A	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr5	13790759	T-C	Hetero	INTERGENIC
SBS	Chr5	20541119	C-T	Hetero	INTRON
SBS	Chr6	14897559	C-G	Homo	INTERGENIC
SBS	Chr6	28286733	A-G	Hetero	INTERGENIC
SBS	Chr7	1500322	G-A	Hetero	INTERGENIC
SBS	Chr7	2285413	G-A	Hetero	INTERGENIC
SBS	Chr7	2285414	G-A	Hetero	INTERGENIC
SBS	Chr7	10645721	G-A	Homo	INTERGENIC
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	20512296	G-T	Hetero	INTRON
SBS	Chr8	331465	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	2033927	G-C	Hetero	INTERGENIC
SBS	Chr8	5957922	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g064600
SBS	Chr8	6339257	G-A	Hetero	INTERGENIC
SBS	Chr8	8583382	C-A	Hetero	INTERGENIC
SBS	Chr8	12464931	C-T	Hetero	INTERGENIC
SBS	Chr8	14122510	T-C	Hetero	INTRON
SBS	Chr8	25667308	A-T	Hetero	INTERGENIC
SBS	Chr8	27795055	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g229500
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	5056838	A-G	Hetero	INTERGENIC
SBS	Chr10	613759	G-T	Hetero	INTERGENIC
SBS	Chr10	2361583	C-A	Hetero	UTR_3_PRIME
SBS	Chr10	4554827	T-G	Hetero	INTRON
SBS	Chr10	8049891	G-A	Hetero	INTERGENIC
SBS	Chr10	9681171	C-A	Hetero	INTERGENIC
SBS	Chr10	10145046	A-G	Hetero	INTERGENIC
SBS	Chr11	18922717	G-T	Homo	INTERGENIC
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr12	714517	G-A	Hetero	INTERGENIC
SBS	Chr12	7719552	G-A	Hetero	INTERGENIC
SBS	Chr12	7929196	A-G	Hetero	INTERGENIC
SBS	Chr12	16830191	G-A	Hetero	INTERGENIC
SBS	Chr12	16830827	G-T	Hetero	INTERGENIC
SBS	Chr12	17659701	G-A	Hetero	INTRON
SBS	Chr12	24697329	C-T	Hetero	INTERGENIC
SBS	Chr12	24697330	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1569745	1569747	2
Deletion	Chr1	2279800	2279805	5
Deletion	Chr7	4002001	4026000	23999	3
Deletion	Chr9	4338001	4378000	39999	4
Deletion	Chr2	4895210	4895212	2
Deletion	Chr5	8334613	8334615	2
Deletion	Chr7	10976630	10976635	5
Deletion	Chr4	13192567	13192569	2
Deletion	Chr7	14992187	14992195	8
Deletion	Chr6	16863001	16875000	11999	2
Deletion	Chr3	18328001	18446000	117999	9
Deletion	Chr2	18384413	18384424	11
Deletion	Chr3	18450001	18767000	316999	23
Deletion	Chr1	22900776	22900788	12
Deletion	Chr1	27082062	27082064	2
Deletion	Chr2	27791231	27791232	1	OsKitaake02g279400
Deletion	Chr2	28735730	28735736	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4287638	4398514	OsKitaake09g023300
Inversion	Chr9	4287644	4379688	OsKitaake09g023300
Inversion	Chr9	4338205	5053489
Inversion	Chr9	5053493	5914552
Inversion	Chr6	20930675	20945094
Inversion	Chr6	20930683	20945095

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes