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Mutant Information

Mutant Name	FN317-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN317-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 21351762 C-A Homo INTERGENIC
SBS Chr2 21355740 C-G Homo INTERGENIC
SBS Chr3 2596370 T-C Hetero INTERGENIC
SBS Chr4 7680413 G-T Hetero INTERGENIC
SBS Chr4 11054906 G-A Hetero INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr4 21748862 A-G Hetero INTERGENIC
SBS Chr4 21748864 A-T Hetero INTERGENIC
SBS Chr4 22672575 C-T Hetero INTERGENIC
SBS Chr4 22672580 C-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr6 27740233 T-C Hetero INTERGENIC
SBS Chr7 7598460 T-G Hetero INTERGENIC
SBS Chr7 25335512 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g229400
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr12 1803134 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 26840669 A-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 827634 827643 9
Deletion Chr8 2075942 2075959 17
Deletion Chr1 10822381 10822384 3
Deletion Chr11 11376504 11376505 1
Deletion Chr10 14644999 14645047 48
Deletion Chr9 14854395 14854399 4
Deletion Chr1 17396126 17396137 11
Deletion Chr4 19818423 19818424 1
Deletion Chr8 19960359 19960360 1
Deletion Chr8 21333512 21333514 2
Deletion Chr1 27354875 27354876 1 OsKitaake01g266400
Deletion Chr4 27724658 27724660 2
Deletion Chr2 27811809 27811810 1
Deletion Chr8 29262585 29262597 12
Deletion Chr3 36371796 36371798 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 37368951 37368954 2
Insertion Chr3 8671974 8671978 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	21351762	C-A	Homo	INTERGENIC
SBS	Chr2	21355740	C-G	Homo	INTERGENIC
SBS	Chr3	2596370	T-C	Hetero	INTERGENIC
SBS	Chr4	7680413	G-T	Hetero	INTERGENIC
SBS	Chr4	11054906	G-A	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr4	21748862	A-G	Hetero	INTERGENIC
SBS	Chr4	21748864	A-T	Hetero	INTERGENIC
SBS	Chr4	22672575	C-T	Hetero	INTERGENIC
SBS	Chr4	22672580	C-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr6	27740233	T-C	Hetero	INTERGENIC
SBS	Chr7	7598460	T-G	Hetero	INTERGENIC
SBS	Chr7	25335512	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g229400
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr12	1803134	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	26840669	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	827634	827643	9
Deletion	Chr8	2075942	2075959	17
Deletion	Chr1	10822381	10822384	3
Deletion	Chr11	11376504	11376505	1
Deletion	Chr10	14644999	14645047	48
Deletion	Chr9	14854395	14854399	4
Deletion	Chr1	17396126	17396137	11
Deletion	Chr4	19818423	19818424	1
Deletion	Chr8	19960359	19960360	1
Deletion	Chr8	21333512	21333514	2
Deletion	Chr1	27354875	27354876	1	OsKitaake01g266400
Deletion	Chr4	27724658	27724660	2
Deletion	Chr2	27811809	27811810	1
Deletion	Chr8	29262585	29262597	12
Deletion	Chr3	36371796	36371798	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes