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Mutant Information

Mutant Name	FN321-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN321-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1332728 G-A Hetero INTERGENIC
SBS Chr1 2534781 C-T Hetero INTERGENIC
SBS Chr1 19319639 A-C Hetero INTRON
SBS Chr1 23532514 T-A Hetero UTR_5_PRIME
SBS Chr1 23532515 T-A Hetero UTR_5_PRIME
SBS Chr1 35111271 A-T Hetero INTERGENIC
SBS Chr2 12717654 G-T Homo INTERGENIC
SBS Chr2 21625560 G-A Hetero INTERGENIC
SBS Chr2 23471938 C-T Homo INTERGENIC
SBS Chr2 31758209 G-A Hetero INTERGENIC
SBS Chr3 34605027 T-A Homo INTERGENIC
SBS Chr4 31586974 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g249000
SBS Chr5 2769092 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g031500
SBS Chr5 14449355 C-T Hetero INTERGENIC
SBS Chr5 21242369 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g171500
SBS Chr5 29014226 C-A Hetero INTERGENIC
SBS Chr7 21587006 C-T Hetero INTERGENIC
SBS Chr7 23251823 C-A Hetero INTRON
SBS Chr8 779940 T-G Homo INTERGENIC
SBS Chr8 8354444 C-A Homo INTERGENIC
SBS Chr9 4825655 G-T Hetero INTERGENIC
SBS Chr9 15598113 A-T Hetero UTR_3_PRIME
SBS Chr11 10599242 G-A Hetero INTERGENIC
SBS Chr11 12993710 T-C Hetero INTERGENIC
SBS Chr11 14771893 G-A Hetero INTERGENIC
SBS Chr12 18097331 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 469155 469156 1
Deletion Chr8 1142131 1142139 8
Deletion Chr9 2299557 2299560 3
Deletion Chr9 3531068 3531069 1 OsKitaake09g018200
Deletion Chr2 4345424 4345433 9
Deletion Chr11 7254776 7254786 10
Deletion Chr9 10343112 10343113 1
Deletion Chr9 11157130 11157137 7
Deletion Chr4 14679289 14679292 3
Deletion Chr12 17477001 17500000 22999 3
Deletion Chr8 20782001 20782005 4
Deletion Chr6 25447959 25447960 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 3075334 3075337 2
Insertion Chr7 5656390 5656394 3
Insertion Chr2 6961503 6961505 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13107011 13410497 OsKitaake01g155300
Inversion Chr1 13107083 13410503 OsKitaake01g155300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1332728	G-A	Hetero	INTERGENIC
SBS	Chr1	2534781	C-T	Hetero	INTERGENIC
SBS	Chr1	19319639	A-C	Hetero	INTRON
SBS	Chr1	23532514	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	23532515	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	35111271	A-T	Hetero	INTERGENIC
SBS	Chr2	12717654	G-T	Homo	INTERGENIC
SBS	Chr2	21625560	G-A	Hetero	INTERGENIC
SBS	Chr2	23471938	C-T	Homo	INTERGENIC
SBS	Chr2	31758209	G-A	Hetero	INTERGENIC
SBS	Chr3	34605027	T-A	Homo	INTERGENIC
SBS	Chr4	31586974	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g249000
SBS	Chr5	2769092	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g031500
SBS	Chr5	14449355	C-T	Hetero	INTERGENIC
SBS	Chr5	21242369	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g171500
SBS	Chr5	29014226	C-A	Hetero	INTERGENIC
SBS	Chr7	21587006	C-T	Hetero	INTERGENIC
SBS	Chr7	23251823	C-A	Hetero	INTRON
SBS	Chr8	779940	T-G	Homo	INTERGENIC
SBS	Chr8	8354444	C-A	Homo	INTERGENIC
SBS	Chr9	4825655	G-T	Hetero	INTERGENIC
SBS	Chr9	15598113	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	10599242	G-A	Hetero	INTERGENIC
SBS	Chr11	12993710	T-C	Hetero	INTERGENIC
SBS	Chr11	14771893	G-A	Hetero	INTERGENIC
SBS	Chr12	18097331	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	469155	469156	1
Deletion	Chr8	1142131	1142139	8
Deletion	Chr9	2299557	2299560	3
Deletion	Chr9	3531068	3531069	1	OsKitaake09g018200
Deletion	Chr2	4345424	4345433	9
Deletion	Chr11	7254776	7254786	10
Deletion	Chr9	10343112	10343113	1
Deletion	Chr9	11157130	11157137	7
Deletion	Chr4	14679289	14679292	3
Deletion	Chr12	17477001	17500000	22999	3
Deletion	Chr8	20782001	20782005	4
Deletion	Chr6	25447959	25447960	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13107011	13410497	OsKitaake01g155300
Inversion	Chr1	13107083	13410503	OsKitaake01g155300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes