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Mutant Information

Mutant Name	FN3301-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3301-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13719364 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 30693046 G-A Hetero INTERGENIC
SBS Chr2 7191771 A-G Homo INTERGENIC
SBS Chr2 28620594 C-T Hetero INTERGENIC
SBS Chr3 17704004 C-T Hetero INTERGENIC
SBS Chr3 25858354 T-C Hetero INTERGENIC
SBS Chr4 6359376 G-T Homo INTERGENIC
SBS Chr4 8004736 G-A Hetero INTERGENIC
SBS Chr4 17019474 G-T Homo INTERGENIC
SBS Chr4 17245044 G-A Hetero INTERGENIC
SBS Chr5 5221158 T-C Hetero INTERGENIC
SBS Chr5 26061396 C-T Homo INTERGENIC
SBS Chr6 15022431 A-C Homo INTERGENIC
SBS Chr6 27243305 G-A Homo INTERGENIC
SBS Chr6 27957307 G-T Homo INTERGENIC
SBS Chr7 10904030 T-A Hetero INTERGENIC
SBS Chr7 23466312 G-T Hetero INTERGENIC
SBS Chr7 26605965 C-T Hetero SPLICE_SITE_DONOR OsKitaake07g246900
SBS Chr8 17541907 C-G Hetero INTERGENIC
SBS Chr8 24225755 C-T Hetero INTERGENIC
SBS Chr8 29301323 G-A Hetero INTERGENIC
SBS Chr10 1833724 G-A Homo INTERGENIC
SBS Chr10 9556290 C-T Homo INTRON
SBS Chr10 9818261 T-A Homo INTERGENIC
SBS Chr10 9818262 C-A Homo INTERGENIC
SBS Chr11 2026246 A-G Hetero INTERGENIC
SBS Chr11 13087777 C-T Hetero INTERGENIC
SBS Chr11 16574197 G-A Hetero INTERGENIC
SBS Chr11 21399216 A-G Hetero INTERGENIC
SBS Chr11 22891973 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g181200
SBS Chr12 4012483 G-A Hetero INTERGENIC
SBS Chr12 14300140 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1113001 1265000 151999 24
Deletion Chr5 3245935 3245937 2
Deletion Chr7 3485718 3485720 2
Deletion Chr10 6105403 6105408 5
Deletion Chr11 6240739 6240740 1
Deletion Chr2 7198652 7198658 6
Deletion Chr8 8176974 8176975 1
Deletion Chr10 9401184 9401197 13
Deletion Chr6 14569001 14853000 283999 14
Deletion Chr6 14861001 14924000 62999 5
Deletion Chr6 15451001 15734000 282999 9
Deletion Chr2 15845947 15845949 2
Deletion Chr3 16453731 16453736 5
Deletion Chr6 17275001 17314000 38999 5
Deletion Chr3 20514717 20514724 7
Deletion Chr3 26063430 26063432 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26156687 26156690 2
Insertion Chr7 1197633 1197635 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12795465 12801143 OsKitaake07g113500
Inversion Chr7 12795478 12801152 OsKitaake07g113500
Inversion Chr8 19261792 20212007
Inversion Chr8 19261793 20212007
Inversion Chr7 27553031 28184845
Inversion Chr7 27553040 28184845

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 6711178 Chr8 232176 OsKitaake08g003200
Translocation Chr10 6711184 Chr8 230725

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13719364	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	30693046	G-A	Hetero	INTERGENIC
SBS	Chr2	7191771	A-G	Homo	INTERGENIC
SBS	Chr2	28620594	C-T	Hetero	INTERGENIC
SBS	Chr3	17704004	C-T	Hetero	INTERGENIC
SBS	Chr3	25858354	T-C	Hetero	INTERGENIC
SBS	Chr4	6359376	G-T	Homo	INTERGENIC
SBS	Chr4	8004736	G-A	Hetero	INTERGENIC
SBS	Chr4	17019474	G-T	Homo	INTERGENIC
SBS	Chr4	17245044	G-A	Hetero	INTERGENIC
SBS	Chr5	5221158	T-C	Hetero	INTERGENIC
SBS	Chr5	26061396	C-T	Homo	INTERGENIC
SBS	Chr6	15022431	A-C	Homo	INTERGENIC
SBS	Chr6	27243305	G-A	Homo	INTERGENIC
SBS	Chr6	27957307	G-T	Homo	INTERGENIC
SBS	Chr7	10904030	T-A	Hetero	INTERGENIC
SBS	Chr7	23466312	G-T	Hetero	INTERGENIC
SBS	Chr7	26605965	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake07g246900
SBS	Chr8	17541907	C-G	Hetero	INTERGENIC
SBS	Chr8	24225755	C-T	Hetero	INTERGENIC
SBS	Chr8	29301323	G-A	Hetero	INTERGENIC
SBS	Chr10	1833724	G-A	Homo	INTERGENIC
SBS	Chr10	9556290	C-T	Homo	INTRON
SBS	Chr10	9818261	T-A	Homo	INTERGENIC
SBS	Chr10	9818262	C-A	Homo	INTERGENIC
SBS	Chr11	2026246	A-G	Hetero	INTERGENIC
SBS	Chr11	13087777	C-T	Hetero	INTERGENIC
SBS	Chr11	16574197	G-A	Hetero	INTERGENIC
SBS	Chr11	21399216	A-G	Hetero	INTERGENIC
SBS	Chr11	22891973	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g181200
SBS	Chr12	4012483	G-A	Hetero	INTERGENIC
SBS	Chr12	14300140	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1113001	1265000	151999	24
Deletion	Chr5	3245935	3245937	2
Deletion	Chr7	3485718	3485720	2
Deletion	Chr10	6105403	6105408	5
Deletion	Chr11	6240739	6240740	1
Deletion	Chr2	7198652	7198658	6
Deletion	Chr8	8176974	8176975	1
Deletion	Chr10	9401184	9401197	13
Deletion	Chr6	14569001	14853000	283999	14
Deletion	Chr6	14861001	14924000	62999	5
Deletion	Chr6	15451001	15734000	282999	9
Deletion	Chr2	15845947	15845949	2
Deletion	Chr3	16453731	16453736	5
Deletion	Chr6	17275001	17314000	38999	5
Deletion	Chr3	20514717	20514724	7
Deletion	Chr3	26063430	26063432	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12795465	12801143	OsKitaake07g113500
Inversion	Chr7	12795478	12801152	OsKitaake07g113500
Inversion	Chr8	19261792	20212007
Inversion	Chr8	19261793	20212007
Inversion	Chr7	27553031	28184845
Inversion	Chr7	27553040	28184845

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes