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Mutant Information

Mutant Name	FN337-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN337-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10099340 A-T Homo INTRON
SBS Chr1 38005539 G-A Homo SYNONYMOUS_CODING
SBS Chr2 6589789 A-G Hetero INTERGENIC
SBS Chr2 20495606 C-T Homo INTERGENIC
SBS Chr2 30563022 T-A Homo INTERGENIC
SBS Chr2 31178925 A-G Hetero INTRON
SBS Chr2 36793864 G-T Homo INTRON
SBS Chr3 2458202 A-G Hetero INTERGENIC
SBS Chr3 9597206 A-G Hetero INTERGENIC
SBS Chr3 27189287 G-C Hetero INTERGENIC
SBS Chr4 3804865 A-T Hetero INTERGENIC
SBS Chr4 3804866 C-G Hetero INTERGENIC
SBS Chr4 18533749 G-C Hetero INTERGENIC
SBS Chr4 21412841 C-T Hetero INTERGENIC
SBS Chr4 22569750 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g133700
SBS Chr5 5059844 C-T Hetero INTERGENIC
SBS Chr6 4080388 G-A Hetero INTRON
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr6 30753737 C-A Hetero INTERGENIC
SBS Chr7 167498 A-G Hetero INTERGENIC
SBS Chr7 12802543 G-A Hetero INTERGENIC
SBS Chr7 17891291 G-C Hetero INTERGENIC
SBS Chr7 18042044 G-A Hetero INTRON
SBS Chr8 7738229 T-C Homo INTERGENIC
SBS Chr8 25895741 G-A Hetero INTRON
SBS Chr9 16810280 G-A Hetero INTERGENIC
SBS Chr10 1963501 G-A Homo INTERGENIC
SBS Chr10 16455793 A-G Hetero INTERGENIC
SBS Chr11 13101396 G-A Hetero INTERGENIC
SBS Chr11 19946762 T-A Hetero INTRON
SBS Chr11 29271840 A-G Homo INTERGENIC
SBS Chr11 29271843 C-T Homo INTERGENIC
SBS Chr12 372621 G-A Hetero INTERGENIC
SBS Chr12 1481626 T-C Homo INTRON
SBS Chr12 1871884 C-G Homo UTR_3_PRIME
SBS Chr12 1871885 A-G Homo UTR_3_PRIME
SBS Chr12 22933649 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1378146 1378149 3
Deletion Chr12 5159820 5159821 1
Deletion Chr10 9303553 9303567 14
Deletion Chr2 15133001 15186000 52999 2
Deletion Chr10 17179210 17179212 2 OsKitaake10g117400
Deletion Chr6 19009581 19009591 10
Deletion Chr1 19879659 19879662 3
Deletion Chr10 21195451 21195452 1 OsKitaake10g164800
Deletion Chr3 24851685 24851686 1
Deletion Chr11 29462503 29462507 4
Deletion Chr2 36793948 36793957 9 OsKitaake02g393100

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4040901 4040904 2
Insertion Chr5 26136386 26136389 2
Insertion Chr6 10559067 10559069 1
Insertion Chr7 24265846 24265849 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 15650589 16010906
Inversion Chr10 15657105 16010908 OsKitaake10g102100
Inversion Chr1 43654351 43705949 2
Inversion Chr1 43654355 43705953 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 8184687 Chr1 43823785
Translocation Chr10 15650591 Chr8 25895532 OsKitaake08g205801
Translocation Chr10 15650656 Chr8 25895534 OsKitaake08g205801

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10099340	A-T	Homo	INTRON
SBS	Chr1	38005539	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	6589789	A-G	Hetero	INTERGENIC
SBS	Chr2	20495606	C-T	Homo	INTERGENIC
SBS	Chr2	30563022	T-A	Homo	INTERGENIC
SBS	Chr2	31178925	A-G	Hetero	INTRON
SBS	Chr2	36793864	G-T	Homo	INTRON
SBS	Chr3	2458202	A-G	Hetero	INTERGENIC
SBS	Chr3	9597206	A-G	Hetero	INTERGENIC
SBS	Chr3	27189287	G-C	Hetero	INTERGENIC
SBS	Chr4	3804865	A-T	Hetero	INTERGENIC
SBS	Chr4	3804866	C-G	Hetero	INTERGENIC
SBS	Chr4	18533749	G-C	Hetero	INTERGENIC
SBS	Chr4	21412841	C-T	Hetero	INTERGENIC
SBS	Chr4	22569750	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g133700
SBS	Chr5	5059844	C-T	Hetero	INTERGENIC
SBS	Chr6	4080388	G-A	Hetero	INTRON
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	30753737	C-A	Hetero	INTERGENIC
SBS	Chr7	167498	A-G	Hetero	INTERGENIC
SBS	Chr7	12802543	G-A	Hetero	INTERGENIC
SBS	Chr7	17891291	G-C	Hetero	INTERGENIC
SBS	Chr7	18042044	G-A	Hetero	INTRON
SBS	Chr8	7738229	T-C	Homo	INTERGENIC
SBS	Chr8	25895741	G-A	Hetero	INTRON
SBS	Chr9	16810280	G-A	Hetero	INTERGENIC
SBS	Chr10	1963501	G-A	Homo	INTERGENIC
SBS	Chr10	16455793	A-G	Hetero	INTERGENIC
SBS	Chr11	13101396	G-A	Hetero	INTERGENIC
SBS	Chr11	19946762	T-A	Hetero	INTRON
SBS	Chr11	29271840	A-G	Homo	INTERGENIC
SBS	Chr11	29271843	C-T	Homo	INTERGENIC
SBS	Chr12	372621	G-A	Hetero	INTERGENIC
SBS	Chr12	1481626	T-C	Homo	INTRON
SBS	Chr12	1871884	C-G	Homo	UTR_3_PRIME
SBS	Chr12	1871885	A-G	Homo	UTR_3_PRIME
SBS	Chr12	22933649	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1378146	1378149	3
Deletion	Chr12	5159820	5159821	1
Deletion	Chr10	9303553	9303567	14
Deletion	Chr2	15133001	15186000	52999	2
Deletion	Chr10	17179210	17179212	2	OsKitaake10g117400
Deletion	Chr6	19009581	19009591	10
Deletion	Chr1	19879659	19879662	3
Deletion	Chr10	21195451	21195452	1	OsKitaake10g164800
Deletion	Chr3	24851685	24851686	1
Deletion	Chr11	29462503	29462507	4
Deletion	Chr2	36793948	36793957	9	OsKitaake02g393100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15650589	16010906
Inversion	Chr10	15657105	16010908	OsKitaake10g102100
Inversion	Chr1	43654351	43705949	2
Inversion	Chr1	43654355	43705953	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes