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| Mutant Information |
|---|
| Mutant Name | FN3390-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3390-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6216811 | C-A | Homo | INTRON | |
| SBS | Chr1 | 38772311 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6980480 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22228174 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g215500 |
| SBS | Chr2 | 28255013 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 35822861 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 5325302 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14208330 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 25697248 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g271100 |
| SBS | Chr4 | 10840769 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21792622 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 14359220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18749209 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26502400 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1713849 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 4892223 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8274416 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8634428 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18650005 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8581098 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17441474 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19042216 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 833636 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 20493283 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 20493285 | G-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr11 | 5353470 | C-T | Homo | INTRON | |
| SBS | Chr11 | 6307114 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 6385780 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18827370 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 21095637 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 23540493 | C-G | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 5825669 | 5825670 | 1 | |
| Deletion | Chr8 | 6656926 | 6656931 | 5 | |
| Deletion | Chr10 | 10597216 | 10597218 | 2 | OsKitaake10g062800 |
| Deletion | Chr9 | 14184001 | 14231000 | 46999 | 5 |
| Deletion | Chr9 | 14238001 | 14697000 | 458999 | 59 |
| Deletion | Chr4 | 14622193 | 14622194 | 1 | |
| Deletion | Chr9 | 14730001 | 14758000 | 27999 | 2 |
| Deletion | Chr9 | 14989001 | 15030000 | 40999 | 3 |
| Deletion | Chr2 | 18402626 | 18402628 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4007927 | 4007930 | 2 | |
| Insertion | Chr12 | 887378 | 887381 | 2 | |
| Insertion | Chr12 | 18823179 | 18823183 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 1140917 | 1143372 | |
| Inversion | Chr11 | 1141110 | 1143380 | |
| Inversion | Chr1 | 6304417 | 7005611 | OsKitaake01g087900 |
| Inversion | Chr1 | 6304420 | 7005618 | OsKitaake01g087900 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1140924 | Chr9 | 14183581 | OsKitaake09g095300 |
| Translocation | Chr11 | 1141101 | Chr9 | 14701189 | |
| Translocation | Chr10 | 13161154 | Chr4 | 9662369 |