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Mutant Information

Mutant Name	FN3393-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3393-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4891078 G-T Hetero INTERGENIC
SBS Chr1 8980910 C-T Hetero INTERGENIC
SBS Chr1 17611371 G-A Homo INTERGENIC
SBS Chr1 17772426 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g180800
SBS Chr1 43018476 G-A Hetero INTERGENIC
SBS Chr2 9055433 T-C Hetero UTR_3_PRIME
SBS Chr2 14183543 G-A Hetero INTERGENIC
SBS Chr2 23397402 C-T Hetero UTR_5_PRIME
SBS Chr3 12218492 A-C Hetero INTERGENIC
SBS Chr3 14322804 T-C Hetero INTERGENIC
SBS Chr3 20179677 C-T Homo INTERGENIC
SBS Chr3 28168178 T-G Hetero INTERGENIC
SBS Chr4 1852530 A-T Hetero INTERGENIC
SBS Chr4 14913783 G-A Hetero INTERGENIC
SBS Chr5 5835231 C-T Hetero INTERGENIC
SBS Chr5 10300208 C-T Hetero INTERGENIC
SBS Chr5 24714383 A-C Hetero INTERGENIC
SBS Chr6 3471250 G-A Hetero INTRON
SBS Chr6 17856342 C-A Hetero INTERGENIC
SBS Chr6 21958671 C-T Hetero INTERGENIC
SBS Chr7 1073458 C-A Hetero INTERGENIC
SBS Chr7 2540251 G-A Hetero INTERGENIC
SBS Chr8 7057624 T-G Hetero INTERGENIC
SBS Chr8 16736202 G-C Hetero INTERGENIC
SBS Chr8 17557991 C-T Homo INTERGENIC
SBS Chr8 19751733 A-G Hetero INTERGENIC
SBS Chr9 1632084 G-A Homo INTERGENIC
SBS Chr9 2122474 C-T Homo INTERGENIC
SBS Chr9 6697278 C-T Hetero INTERGENIC
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr10 5111608 A-G Homo INTRON
SBS Chr10 19144567 G-A Hetero INTERGENIC
SBS Chr11 14660479 C-T Hetero INTERGENIC
SBS Chr11 19106598 G-A Homo INTERGENIC
SBS Chr11 19106599 T-G Homo INTERGENIC
SBS Chr12 5902526 C-T Hetero INTERGENIC
SBS Chr12 5902527 C-T Hetero INTERGENIC
SBS Chr12 8539890 G-A Hetero INTERGENIC
SBS Chr12 12719396 C-T Hetero INTERGENIC
SBS Chr12 14273377 G-A Hetero INTERGENIC
SBS Chr12 17095141 C-T Hetero INTERGENIC
SBS Chr12 24982314 C-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 254115 254130 15
Deletion Chr3 704357 704358 1
Deletion Chr12 2781723 2781725 2
Deletion Chr6 4562980 4562984 4
Deletion Chr2 6807659 6807660 1
Deletion Chr4 9589790 9589793 3
Deletion Chr11 11944851 11944861 10
Deletion Chr10 12475509 12475531 22
Deletion Chr12 17483255 17483257 2
Deletion Chr2 17621037 17621041 4
Deletion Chr9 19058001 19081000 22999 3
Deletion Chr9 19110001 19212000 101999 18
Deletion Chr4 21451897 21451898 1
Deletion Chr6 21893097 21893102 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4891078	G-T	Hetero	INTERGENIC
SBS	Chr1	8980910	C-T	Hetero	INTERGENIC
SBS	Chr1	17611371	G-A	Homo	INTERGENIC
SBS	Chr1	17772426	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g180800
SBS	Chr1	43018476	G-A	Hetero	INTERGENIC
SBS	Chr2	9055433	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	14183543	G-A	Hetero	INTERGENIC
SBS	Chr2	23397402	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	12218492	A-C	Hetero	INTERGENIC
SBS	Chr3	14322804	T-C	Hetero	INTERGENIC
SBS	Chr3	20179677	C-T	Homo	INTERGENIC
SBS	Chr3	28168178	T-G	Hetero	INTERGENIC
SBS	Chr4	1852530	A-T	Hetero	INTERGENIC
SBS	Chr4	14913783	G-A	Hetero	INTERGENIC
SBS	Chr5	5835231	C-T	Hetero	INTERGENIC
SBS	Chr5	10300208	C-T	Hetero	INTERGENIC
SBS	Chr5	24714383	A-C	Hetero	INTERGENIC
SBS	Chr6	3471250	G-A	Hetero	INTRON
SBS	Chr6	17856342	C-A	Hetero	INTERGENIC
SBS	Chr6	21958671	C-T	Hetero	INTERGENIC
SBS	Chr7	1073458	C-A	Hetero	INTERGENIC
SBS	Chr7	2540251	G-A	Hetero	INTERGENIC
SBS	Chr8	7057624	T-G	Hetero	INTERGENIC
SBS	Chr8	16736202	G-C	Hetero	INTERGENIC
SBS	Chr8	17557991	C-T	Homo	INTERGENIC
SBS	Chr8	19751733	A-G	Hetero	INTERGENIC
SBS	Chr9	1632084	G-A	Homo	INTERGENIC
SBS	Chr9	2122474	C-T	Homo	INTERGENIC
SBS	Chr9	6697278	C-T	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr10	5111608	A-G	Homo	INTRON
SBS	Chr10	19144567	G-A	Hetero	INTERGENIC
SBS	Chr11	14660479	C-T	Hetero	INTERGENIC
SBS	Chr11	19106598	G-A	Homo	INTERGENIC
SBS	Chr11	19106599	T-G	Homo	INTERGENIC
SBS	Chr12	5902526	C-T	Hetero	INTERGENIC
SBS	Chr12	5902527	C-T	Hetero	INTERGENIC
SBS	Chr12	8539890	G-A	Hetero	INTERGENIC
SBS	Chr12	12719396	C-T	Hetero	INTERGENIC
SBS	Chr12	14273377	G-A	Hetero	INTERGENIC
SBS	Chr12	17095141	C-T	Hetero	INTERGENIC
SBS	Chr12	24982314	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	254115	254130	15
Deletion	Chr3	704357	704358	1
Deletion	Chr12	2781723	2781725	2
Deletion	Chr6	4562980	4562984	4
Deletion	Chr2	6807659	6807660	1
Deletion	Chr4	9589790	9589793	3
Deletion	Chr11	11944851	11944861	10
Deletion	Chr10	12475509	12475531	22
Deletion	Chr12	17483255	17483257	2
Deletion	Chr2	17621037	17621041	4
Deletion	Chr9	19058001	19081000	22999	3
Deletion	Chr9	19110001	19212000	101999	18
Deletion	Chr4	21451897	21451898	1
Deletion	Chr6	21893097	21893102	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes