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Mutant Information

Mutant Name	FN3412-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3412-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7631128 G-A Homo INTERGENIC
SBS Chr1 33428538 G-A Hetero INTERGENIC
SBS Chr2 1779460 T-C Hetero INTRON
SBS Chr2 5381178 T-C Hetero INTERGENIC
SBS Chr2 9181910 C-T Hetero INTERGENIC
SBS Chr2 10567694 T-C Hetero INTERGENIC
SBS Chr2 15483212 G-A Hetero INTERGENIC
SBS Chr2 19690772 G-A Hetero INTERGENIC
SBS Chr2 22226691 C-T Hetero INTRON
SBS Chr3 10300469 G-A Hetero INTRON
SBS Chr3 29880130 C-T Hetero INTRON
SBS Chr4 9073048 A-T Hetero INTERGENIC
SBS Chr4 32383404 A-T Hetero INTERGENIC
SBS Chr4 33672507 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g279300
SBS Chr5 5303554 T-A Hetero INTERGENIC
SBS Chr5 6311602 G-A Hetero INTERGENIC
SBS Chr5 8859414 C-T Hetero INTRON
SBS Chr5 8859423 G-T Hetero INTRON
SBS Chr5 11476806 T-C Hetero INTERGENIC
SBS Chr6 5227018 G-T Homo INTERGENIC
SBS Chr6 6682458 T-C Homo INTERGENIC
SBS Chr6 15853261 G-A Hetero INTERGENIC
SBS Chr6 26489494 A-G Hetero INTERGENIC
SBS Chr6 28153734 A-T Hetero INTERGENIC
SBS Chr8 13082995 G-A Hetero INTERGENIC
SBS Chr8 15276923 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g119200
SBS Chr8 26608164 G-A Hetero INTERGENIC
SBS Chr8 28917268 G-A Hetero INTERGENIC
SBS Chr9 7312255 C-G Hetero INTERGENIC
SBS Chr9 11637867 A-T Homo INTERGENIC
SBS Chr9 11637868 A-T Homo INTERGENIC
SBS Chr10 3106132 T-C Hetero INTERGENIC
SBS Chr11 4216039 C-T Hetero INTRON
SBS Chr11 12656638 C-T Hetero INTERGENIC
SBS Chr11 13417713 G-T Homo INTERGENIC
SBS Chr11 16835459 A-C Hetero INTERGENIC
SBS Chr12 2414632 C-T Hetero INTERGENIC
SBS Chr12 15928895 G-A Hetero INTERGENIC
SBS Chr12 18455134 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1108331 1108345 14 OsKitaake05g014000
Deletion Chr11 6121925 6121930 5
Deletion Chr5 9206911 9206912 1
Deletion Chr4 9393085 9393087 2
Deletion Chr3 12247248 12247249 1
Deletion Chr5 12319027 12319029 2
Deletion Chr5 18526012 18526026 14
Deletion Chr2 19989001 20544000 554999 59
Deletion Chr6 20953665 20953666 1
Deletion Chr9 21622219 21622540 321
Deletion Chr3 21767970 21767976 6
Deletion Chr5 29723731 29723744 13
Deletion Chr5 30121645 30121646 1
Deletion Chr3 34871785 34871796 11
Deletion Chr2 35361276 35361286 10
Deletion Chr3 37452110 37452111 1
Deletion Chr1 41475614 41475616 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30981330 30981333 2
Insertion Chr2 33561235 33561238 2
Insertion Chr2 35912871 35912875 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1673010 2346634
Inversion Chr5 1705304 2346626 OsKitaake05g019600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14504393 Chr7 29587393 OsKitaake09g098500
Translocation Chr9 14515470 Chr7 29587390 OsKitaake09g098600
Translocation Chr11 14683349 Chr9 14519260 OsKitaake09g098600
Translocation Chr11 14683533 Chr9 14515484 OsKitaake09g098600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7631128	G-A	Homo	INTERGENIC
SBS	Chr1	33428538	G-A	Hetero	INTERGENIC
SBS	Chr2	1779460	T-C	Hetero	INTRON
SBS	Chr2	5381178	T-C	Hetero	INTERGENIC
SBS	Chr2	9181910	C-T	Hetero	INTERGENIC
SBS	Chr2	10567694	T-C	Hetero	INTERGENIC
SBS	Chr2	15483212	G-A	Hetero	INTERGENIC
SBS	Chr2	19690772	G-A	Hetero	INTERGENIC
SBS	Chr2	22226691	C-T	Hetero	INTRON
SBS	Chr3	10300469	G-A	Hetero	INTRON
SBS	Chr3	29880130	C-T	Hetero	INTRON
SBS	Chr4	9073048	A-T	Hetero	INTERGENIC
SBS	Chr4	32383404	A-T	Hetero	INTERGENIC
SBS	Chr4	33672507	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g279300
SBS	Chr5	5303554	T-A	Hetero	INTERGENIC
SBS	Chr5	6311602	G-A	Hetero	INTERGENIC
SBS	Chr5	8859414	C-T	Hetero	INTRON
SBS	Chr5	8859423	G-T	Hetero	INTRON
SBS	Chr5	11476806	T-C	Hetero	INTERGENIC
SBS	Chr6	5227018	G-T	Homo	INTERGENIC
SBS	Chr6	6682458	T-C	Homo	INTERGENIC
SBS	Chr6	15853261	G-A	Hetero	INTERGENIC
SBS	Chr6	26489494	A-G	Hetero	INTERGENIC
SBS	Chr6	28153734	A-T	Hetero	INTERGENIC
SBS	Chr8	13082995	G-A	Hetero	INTERGENIC
SBS	Chr8	15276923	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g119200
SBS	Chr8	26608164	G-A	Hetero	INTERGENIC
SBS	Chr8	28917268	G-A	Hetero	INTERGENIC
SBS	Chr9	7312255	C-G	Hetero	INTERGENIC
SBS	Chr9	11637867	A-T	Homo	INTERGENIC
SBS	Chr9	11637868	A-T	Homo	INTERGENIC
SBS	Chr10	3106132	T-C	Hetero	INTERGENIC
SBS	Chr11	4216039	C-T	Hetero	INTRON
SBS	Chr11	12656638	C-T	Hetero	INTERGENIC
SBS	Chr11	13417713	G-T	Homo	INTERGENIC
SBS	Chr11	16835459	A-C	Hetero	INTERGENIC
SBS	Chr12	2414632	C-T	Hetero	INTERGENIC
SBS	Chr12	15928895	G-A	Hetero	INTERGENIC
SBS	Chr12	18455134	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1108331	1108345	14	OsKitaake05g014000
Deletion	Chr11	6121925	6121930	5
Deletion	Chr5	9206911	9206912	1
Deletion	Chr4	9393085	9393087	2
Deletion	Chr3	12247248	12247249	1
Deletion	Chr5	12319027	12319029	2
Deletion	Chr5	18526012	18526026	14
Deletion	Chr2	19989001	20544000	554999	59
Deletion	Chr6	20953665	20953666	1
Deletion	Chr9	21622219	21622540	321
Deletion	Chr3	21767970	21767976	6
Deletion	Chr5	29723731	29723744	13
Deletion	Chr5	30121645	30121646	1
Deletion	Chr3	34871785	34871796	11
Deletion	Chr2	35361276	35361286	10
Deletion	Chr3	37452110	37452111	1
Deletion	Chr1	41475614	41475616	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1673010	2346634
Inversion	Chr5	1705304	2346626	OsKitaake05g019600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes