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| Mutant Information |
|---|
| Mutant Name | FN3417-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3417-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20937452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34545991 | A-G | Homo | START_GAINED | |
| SBS | Chr1 | 42269693 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 22183023 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 26471740 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28255013 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 29866247 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 767498 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7566539 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14208330 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 9407263 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 22076927 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 453809 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 16900862 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 13162184 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23194509 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 26451038 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29253376 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g270900 |
| SBS | Chr7 | 11474501 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15296858 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 6571365 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 18856638 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15859530 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13110689 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13110691 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 6911880 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13635395 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 14291272 | T-C | Homo | INTRON | |
| SBS | Chr12 | 11829482 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 22566887 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26057786 | G-A | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 2969466 | 2969471 | 5 | |
| Deletion | Chr2 | 3602601 | 3602602 | 1 | |
| Deletion | Chr1 | 5558001 | 5593000 | 34999 | 2 |
| Deletion | Chr3 | 6563494 | 6563498 | 4 | |
| Deletion | Chr1 | 8612783 | 8612784 | 1 | |
| Deletion | Chr10 | 10301287 | 10301288 | 1 | |
| Deletion | Chr3 | 11405568 | 11405570 | 2 | |
| Deletion | Chr6 | 11901289 | 11901293 | 4 | |
| Deletion | Chr9 | 14363800 | 14363801 | 1 | |
| Deletion | Chr4 | 15068270 | 15068272 | 2 | |
| Deletion | Chr8 | 18209745 | 18209746 | 1 | |
| Deletion | Chr2 | 18402626 | 18402628 | 2 | |
| Deletion | Chr4 | 23534380 | 23534392 | 12 | OsKitaake04g147100 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 31561895 | 31561900 | 4 | |
| Insertion | Chr2 | 29292738 | 29292741 | 2 | OsKitaake02g294500  |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 17293937 | 17294804 | |
| Inversion | Chr5 | 17293941 | 17294810 | |
| Inversion | Chr6 | 26119471 | 26705239 | |
| Inversion | Chr6 | 26120155 | 26705244 | |
| Inversion | Chr4 | 27226610 | 27270305 | OsKitaake04g198500 |
| Inversion | Chr4 | 27226639 | 27270308 | OsKitaake04g198500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 19894761 | Chr2 | 37127324 | |
| Translocation | Chr3 | 19895683 | Chr2 | 37127340 | |
| Translocation | Chr6 | 26120145 | Chr2 | 3826304 | OsKitaake02g055200 |
| Translocation | Chr6 | 27467863 | Chr5 | 17654556 |