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| Mutant Information |
|---|
| Mutant Name | FN3431-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3431-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15709412 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g171001 |
| SBS | Chr1 | 15928512 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 5836814 | C-T | Homo | INTRON | |
| SBS | Chr2 | 14844904 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23785766 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4599703 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 21204953 | A-T | Homo | INTRON | |
| SBS | Chr3 | 22748499 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6115822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19234110 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29016089 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 8401242 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 745433 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 2215249 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g030900 |
| SBS | Chr7 | 10477815 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12080860 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 12388476 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2067265 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 7401448 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 21734968 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g164300 |
| SBS | Chr9 | 1679248 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17994858 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g137700 |
| SBS | Chr10 | 407501 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 3248946 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4719269 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14890611 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23098276 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 23802395 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16240564 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 18292716 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 21315892 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9407514 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25269573 | C-T | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3007831 | 3007832 | 1 | OsKitaake02g042900 |
| Deletion | Chr8 | 13490546 | 13490548 | 2 | |
| Deletion | Chr9 | 18107001 | 18151000 | 43999 | 7 |
| Deletion | Chr2 | 19289001 | 19771000 | 481999 | 43 |
| Deletion | Chr2 | 20139001 | 20235000 | 95999 | 11 |
| Deletion | Chr2 | 21427001 | 21445000 | 17999 | 2 |
| Deletion | Chr7 | 24430863 | 24430864 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 5949950 | 5949953 | 2 | |
| Insertion | Chr12 | 23606341 | 23606344 | 2 | |
| Insertion | Chr5 | 30215229 | 30215231 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 1899191 | 2345269 | |
| Inversion | Chr12 | 1899201 | 2345274 | |
| Inversion | Chr10 | 9046310 | 9428187 | OsKitaake10g054600 |
| Inversion | Chr10 | 9046382 | 9428204 | OsKitaake10g054600 |
| Inversion | Chr9 | 18151721 | 18483875 | 2 |
| Inversion | Chr2 | 19292088 | 20290398 | OsKitaake02g197800 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 18110476 | Chr3 | 15403834 |