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Mutant Information

Mutant Name	FN3477-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3477-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3373130 C-A Homo INTERGENIC
SBS Chr1 6647400 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g083900
SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 13907061 G-C Hetero INTERGENIC
SBS Chr1 31762069 G-A Hetero INTERGENIC
SBS Chr1 40532630 G-C Hetero INTERGENIC
SBS Chr2 10249605 C-A Hetero INTERGENIC
SBS Chr3 18927558 G-T Hetero INTERGENIC
SBS Chr4 2198223 T-C Hetero INTERGENIC
SBS Chr4 20627128 G-T Homo INTERGENIC
SBS Chr4 34213884 T-A Hetero INTRON
SBS Chr5 6281992 T-A Hetero INTERGENIC
SBS Chr5 15398121 G-A Homo INTERGENIC
SBS Chr5 22791020 G-A Hetero INTERGENIC
SBS Chr5 27184226 A-G Homo INTERGENIC
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 21538307 G-A Homo INTERGENIC
SBS Chr7 6747098 G-A Hetero INTERGENIC
SBS Chr7 11952414 C-T Hetero INTERGENIC
SBS Chr7 19082272 G-A Hetero INTERGENIC
SBS Chr7 25132838 G-A Homo INTERGENIC
SBS Chr8 7543840 C-G Homo INTERGENIC
SBS Chr8 22250288 A-C Hetero INTERGENIC
SBS Chr8 23576888 C-G Homo INTERGENIC
SBS Chr9 3660298 G-A Hetero UTR_3_PRIME
SBS Chr10 671778 C-T Hetero INTERGENIC
SBS Chr11 8758200 G-A Hetero INTERGENIC
SBS Chr11 13622085 T-A Hetero INTERGENIC
SBS Chr12 3641437 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g050700
SBS Chr12 8396267 G-T Hetero INTERGENIC
SBS Chr12 13256044 C-G Hetero INTERGENIC
SBS Chr12 16815338 C-T Hetero INTERGENIC
SBS Chr12 18566486 A-C Hetero INTERGENIC
SBS Chr12 18716576 G-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2785744 2785748 4
Deletion Chr2 4942962 4942963 1 OsKitaake02g068700
Deletion Chr3 6178367 6178376 9
Deletion Chr8 8478250 8478252 2
Deletion Chr2 8799464 8799468 4
Deletion Chr8 13924848 13924849 1
Deletion Chr8 14088407 14088408 1
Deletion Chr12 16638099 16638102 3
Deletion Chr12 18683001 18706000 22999 4
Deletion Chr3 18964336 18964358 22
Deletion Chr8 20132673 20132682 9
Deletion Chr5 20369211 20369212 1
Deletion Chr3 20868992 20868993 1
Deletion Chr4 23626064 23626070 6 OsKitaake04g148900
Deletion Chr1 25469104 25469106 2
Deletion Chr7 25666665 25666670 5
Deletion Chr11 25972682 25972685 3
Deletion Chr6 26421945 26421948 3
Deletion Chr11 26612177 26612184 7
Deletion Chr3 32897340 32897341 1 OsKitaake03g349600
Deletion Chr2 36127463 36127471 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15996493 15996497 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 9921556 10347228 OsKitaake02g123400
Inversion Chr2 9921584 10347229 OsKitaake02g123400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10346456 Chr8 13857589
Translocation Chr9 10346620 Chr8 13857888
Translocation Chr12 18708310 Chr3 16725853 OsKitaake12g138300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3373130	C-A	Homo	INTERGENIC
SBS	Chr1	6647400	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g083900
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	13907061	G-C	Hetero	INTERGENIC
SBS	Chr1	31762069	G-A	Hetero	INTERGENIC
SBS	Chr1	40532630	G-C	Hetero	INTERGENIC
SBS	Chr2	10249605	C-A	Hetero	INTERGENIC
SBS	Chr3	18927558	G-T	Hetero	INTERGENIC
SBS	Chr4	2198223	T-C	Hetero	INTERGENIC
SBS	Chr4	20627128	G-T	Homo	INTERGENIC
SBS	Chr4	34213884	T-A	Hetero	INTRON
SBS	Chr5	6281992	T-A	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Homo	INTERGENIC
SBS	Chr5	22791020	G-A	Hetero	INTERGENIC
SBS	Chr5	27184226	A-G	Homo	INTERGENIC
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	21538307	G-A	Homo	INTERGENIC
SBS	Chr7	6747098	G-A	Hetero	INTERGENIC
SBS	Chr7	11952414	C-T	Hetero	INTERGENIC
SBS	Chr7	19082272	G-A	Hetero	INTERGENIC
SBS	Chr7	25132838	G-A	Homo	INTERGENIC
SBS	Chr8	7543840	C-G	Homo	INTERGENIC
SBS	Chr8	22250288	A-C	Hetero	INTERGENIC
SBS	Chr8	23576888	C-G	Homo	INTERGENIC
SBS	Chr9	3660298	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	671778	C-T	Hetero	INTERGENIC
SBS	Chr11	8758200	G-A	Hetero	INTERGENIC
SBS	Chr11	13622085	T-A	Hetero	INTERGENIC
SBS	Chr12	3641437	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g050700
SBS	Chr12	8396267	G-T	Hetero	INTERGENIC
SBS	Chr12	13256044	C-G	Hetero	INTERGENIC
SBS	Chr12	16815338	C-T	Hetero	INTERGENIC
SBS	Chr12	18566486	A-C	Hetero	INTERGENIC
SBS	Chr12	18716576	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2785744	2785748	4
Deletion	Chr2	4942962	4942963	1	OsKitaake02g068700
Deletion	Chr3	6178367	6178376	9
Deletion	Chr8	8478250	8478252	2
Deletion	Chr2	8799464	8799468	4
Deletion	Chr8	13924848	13924849	1
Deletion	Chr8	14088407	14088408	1
Deletion	Chr12	16638099	16638102	3
Deletion	Chr12	18683001	18706000	22999	4
Deletion	Chr3	18964336	18964358	22
Deletion	Chr8	20132673	20132682	9
Deletion	Chr5	20369211	20369212	1
Deletion	Chr3	20868992	20868993	1
Deletion	Chr4	23626064	23626070	6	OsKitaake04g148900
Deletion	Chr1	25469104	25469106	2
Deletion	Chr7	25666665	25666670	5
Deletion	Chr11	25972682	25972685	3
Deletion	Chr6	26421945	26421948	3
Deletion	Chr11	26612177	26612184	7
Deletion	Chr3	32897340	32897341	1	OsKitaake03g349600
Deletion	Chr2	36127463	36127471	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9921556	10347228	OsKitaake02g123400
Inversion	Chr2	9921584	10347229	OsKitaake02g123400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes