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| Mutant Information |
|---|
| Mutant Name | FN3478-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3478-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7156382 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29641898 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 28989233 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 28991699 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 1898839 | G-A | Homo | INTRON | |
| SBS | Chr3 | 26423653 | C-T | Homo | INTRON | |
| SBS | Chr4 | 13711951 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4647300 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 10400591 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 17779309 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22602713 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 28516579 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7076412 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 10587493 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19197110 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 19630853 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21807831 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g183300 |
| SBS | Chr8 | 11161332 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28608026 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 901819 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 1617420 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 3270628 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 17412033 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23542231 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23655861 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23725670 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 12000977 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 16163861 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15649987 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2468228 | 2468233 | 5 | |
| Deletion | Chr7 | 5473476 | 5473477 | 1 | |
| Deletion | Chr9 | 8537100 | 8537114 | 14 | |
| Deletion | Chr10 | 9534591 | 9534594 | 3 | |
| Deletion | Chr7 | 10268001 | 10294000 | 25999 | OsKitaake07g100700 |
| Deletion | Chr9 | 10497529 | 10497560 | 31 | |
| Deletion | Chr5 | 11495593 | 11495594 | 1 | |
| Deletion | Chr9 | 12595485 | 12595487 | 2 | OsKitaake09g083100 |
| Deletion | Chr4 | 14043753 | 14043755 | 2 | |
| Deletion | Chr9 | 14509920 | 14509922 | 2 | |
| Deletion | Chr12 | 15646253 | 15646264 | 11 | |
| Deletion | Chr11 | 21478001 | 21478002 | 1 | |
| Deletion | Chr4 | 31668714 | 31668730 | 16 | |
| Deletion | Chr4 | 35610362 | 35610364 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 17360122 | 17360126 | 3 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 18868823 | 19127159 | |
| Inversion | Chr11 | 18869039 | 19127165 | |
| Inversion | Chr4 | 20466485 | 20517106 | OsKitaake04g110800 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3519057 | Chr11 | 18869032 | |
| Translocation | Chr12 | 3519064 | Chr11 | 18868827 | |
| Translocation | Chr7 | 10294300 | Chr4 | 20517110 | OsKitaake04g110800 |
| Translocation | Chr7 | 10296459 | Chr4 | 20466487 | |
| Translocation | Chr5 | 11502238 | Chr2 | 31607720 | |
| Translocation | Chr12 | 14314210 | Chr5 | 26454137 | OsKitaake05g234500 |
| Translocation | Chr12 | 14314259 | Chr5 | 26453283 | OsKitaake05g234500 |
| Translocation | Chr8 | 18294157 | Chr5 | 24769301 | |
| Translocation | Chr8 | 18294163 | Chr5 | 24769787 |