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Mutant Information

Mutant Name	FN3490-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3490-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5466614 G-A Homo INTERGENIC
SBS Chr1 14755523 C-A Hetero INTERGENIC
SBS Chr2 6334796 G-T Hetero INTERGENIC
SBS Chr2 6334797 G-T Hetero INTERGENIC
SBS Chr2 17956948 A-T Homo INTERGENIC
SBS Chr2 17956949 A-T Homo INTERGENIC
SBS Chr2 17956950 G-T Homo INTERGENIC
SBS Chr3 497376 C-T Homo INTERGENIC
SBS Chr3 19094088 T-C Homo SYNONYMOUS_CODING
SBS Chr3 35204378 A-G Hetero INTERGENIC
SBS Chr4 11578215 G-A Homo INTERGENIC
SBS Chr4 20753426 G-A Homo INTERGENIC
SBS Chr4 36547711 T-A Hetero INTERGENIC
SBS Chr6 11589025 T-A Hetero INTERGENIC
SBS Chr6 12087982 G-C Hetero INTERGENIC
SBS Chr6 15915538 C-T Hetero INTERGENIC
SBS Chr6 19091914 C-T Hetero INTERGENIC
SBS Chr6 24690083 A-T Homo INTERGENIC
SBS Chr7 2732765 C-T Hetero INTERGENIC
SBS Chr7 15496885 T-A Homo INTERGENIC
SBS Chr8 10252138 C-A Homo INTERGENIC
SBS Chr9 8849806 T-G Hetero INTERGENIC
SBS Chr9 8857752 G-T Hetero INTERGENIC
SBS Chr9 8857754 A-T Hetero INTERGENIC
SBS Chr9 10420303 C-T Hetero INTRON
SBS Chr10 639693 T-A Hetero INTERGENIC
SBS Chr10 11326114 T-A Hetero INTERGENIC
SBS Chr10 16510303 T-C Homo SYNONYMOUS_CODING
SBS Chr10 16510312 C-A Homo NON_SYNONYMOUS_CODING OsKitaake10g112200
SBS Chr11 80601 C-T Hetero INTERGENIC
SBS Chr11 13639000 C-T Homo INTERGENIC
SBS Chr11 17596255 A-G Hetero INTERGENIC
SBS Chr12 5103499 C-G Hetero INTERGENIC
SBS Chr12 15963447 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 600370 600378 8
Deletion Chr7 738001 848000 109999 20
Deletion Chr4 817001 918000 100999 7
Deletion Chr6 1308689 1308707 18
Deletion Chr7 3364831 3364832 1
Deletion Chr2 4088001 4217000 128999 23
Deletion Chr11 4913625 4913630 5
Deletion Chr1 6171372 6171373 1
Deletion Chr8 14133313 14133323 10
Deletion Chr9 18911248 18911251 3
Deletion Chr1 19296698 19296708 10 OsKitaake01g192900
Deletion Chr3 25804897 25804898 1
Deletion Chr1 26206001 26228000 21999 2
Deletion Chr1 26232001 26297000 64999 6
Deletion Chr2 29925745 29925752 7
Deletion Chr4 32148001 32159000 10999 OsKitaake04g255600
Deletion Chr2 33887209 33887217 8
Deletion Chr1 34767123 34767127 4
Deletion Chr4 36220392 36220393 1
Deletion Chr1 39201331 39201340 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17705693 17705700 6
Insertion Chr4 15258607 15258610 2
Insertion Chr12 23253486 23253489 2
Insertion Chr1 9692959 9692961 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 12435045 12563363
Inversion Chr12 12437379 12563368
Inversion Chr6 24685769 25553635 OsKitaake06g219100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4085276 Chr1 26206768 OsKitaake01g255600
Translocation Chr2 4215580 Chr1 26197441
Translocation Chr6 24685799 Chr5 27677116 OsKitaake06g219100
Translocation Chr6 25553643 Chr5 27673917

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5466614	G-A	Homo	INTERGENIC
SBS	Chr1	14755523	C-A	Hetero	INTERGENIC
SBS	Chr2	6334796	G-T	Hetero	INTERGENIC
SBS	Chr2	6334797	G-T	Hetero	INTERGENIC
SBS	Chr2	17956948	A-T	Homo	INTERGENIC
SBS	Chr2	17956949	A-T	Homo	INTERGENIC
SBS	Chr2	17956950	G-T	Homo	INTERGENIC
SBS	Chr3	497376	C-T	Homo	INTERGENIC
SBS	Chr3	19094088	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	35204378	A-G	Hetero	INTERGENIC
SBS	Chr4	11578215	G-A	Homo	INTERGENIC
SBS	Chr4	20753426	G-A	Homo	INTERGENIC
SBS	Chr4	36547711	T-A	Hetero	INTERGENIC
SBS	Chr6	11589025	T-A	Hetero	INTERGENIC
SBS	Chr6	12087982	G-C	Hetero	INTERGENIC
SBS	Chr6	15915538	C-T	Hetero	INTERGENIC
SBS	Chr6	19091914	C-T	Hetero	INTERGENIC
SBS	Chr6	24690083	A-T	Homo	INTERGENIC
SBS	Chr7	2732765	C-T	Hetero	INTERGENIC
SBS	Chr7	15496885	T-A	Homo	INTERGENIC
SBS	Chr8	10252138	C-A	Homo	INTERGENIC
SBS	Chr9	8849806	T-G	Hetero	INTERGENIC
SBS	Chr9	8857752	G-T	Hetero	INTERGENIC
SBS	Chr9	8857754	A-T	Hetero	INTERGENIC
SBS	Chr9	10420303	C-T	Hetero	INTRON
SBS	Chr10	639693	T-A	Hetero	INTERGENIC
SBS	Chr10	11326114	T-A	Hetero	INTERGENIC
SBS	Chr10	16510303	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr10	16510312	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g112200
SBS	Chr11	80601	C-T	Hetero	INTERGENIC
SBS	Chr11	13639000	C-T	Homo	INTERGENIC
SBS	Chr11	17596255	A-G	Hetero	INTERGENIC
SBS	Chr12	5103499	C-G	Hetero	INTERGENIC
SBS	Chr12	15963447	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	600370	600378	8
Deletion	Chr7	738001	848000	109999	20
Deletion	Chr4	817001	918000	100999	7
Deletion	Chr6	1308689	1308707	18
Deletion	Chr7	3364831	3364832	1
Deletion	Chr2	4088001	4217000	128999	23
Deletion	Chr11	4913625	4913630	5
Deletion	Chr1	6171372	6171373	1
Deletion	Chr8	14133313	14133323	10
Deletion	Chr9	18911248	18911251	3
Deletion	Chr1	19296698	19296708	10	OsKitaake01g192900
Deletion	Chr3	25804897	25804898	1
Deletion	Chr1	26206001	26228000	21999	2
Deletion	Chr1	26232001	26297000	64999	6
Deletion	Chr2	29925745	29925752	7
Deletion	Chr4	32148001	32159000	10999	OsKitaake04g255600
Deletion	Chr2	33887209	33887217	8
Deletion	Chr1	34767123	34767127	4
Deletion	Chr4	36220392	36220393	1
Deletion	Chr1	39201331	39201340	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12435045	12563363
Inversion	Chr12	12437379	12563368
Inversion	Chr6	24685769	25553635	OsKitaake06g219100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes