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Mutant Information

Mutant Name	FN3492-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3492-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14437416 G-T Homo INTERGENIC
SBS Chr1 43614334 A-T Hetero INTRON
SBS Chr2 4905428 T-A Homo INTERGENIC
SBS Chr2 8785966 C-A Hetero INTERGENIC
SBS Chr2 10855856 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g127100
SBS Chr2 13400000 C-T Hetero INTRON
SBS Chr2 27043038 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 32973809 C-A Hetero INTERGENIC
SBS Chr2 32973811 A-G Hetero INTERGENIC
SBS Chr3 6796256 G-A Hetero INTERGENIC
SBS Chr3 10055215 C-G Hetero INTERGENIC
SBS Chr3 17869674 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g218900
SBS Chr4 2906750 G-T Homo INTERGENIC
SBS Chr4 3851224 T-C Homo INTERGENIC
SBS Chr4 18221655 C-T Homo INTERGENIC
SBS Chr5 11527048 C-G Hetero INTERGENIC
SBS Chr5 27085904 G-A Hetero UTR_3_PRIME
SBS Chr5 29364763 G-A Hetero INTERGENIC
SBS Chr6 2669063 C-T Hetero INTERGENIC
SBS Chr7 1636978 A-T Hetero INTERGENIC
SBS Chr7 12314062 C-A Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 10497733 C-T Homo INTERGENIC
SBS Chr8 15776513 A-G Homo INTRON
SBS Chr8 22700493 C-A Homo INTERGENIC
SBS Chr8 24612542 A-G Hetero INTERGENIC
SBS Chr8 25358528 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 28409385 G-A Hetero INTERGENIC
SBS Chr9 1639387 G-A Hetero INTERGENIC
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 12918855 G-T Homo INTERGENIC
SBS Chr10 10219066 A-T Hetero INTERGENIC
SBS Chr10 15989889 G-A Hetero INTERGENIC
SBS Chr11 130383 C-T Homo STOP_GAINED OsKitaake11g000240
SBS Chr11 25243381 G-A Homo INTERGENIC
SBS Chr12 16434968 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 383918 383925 7 OsKitaake12g004500
Deletion Chr12 1516255 1516259 4 OsKitaake12g022800
Deletion Chr7 3234469 3234472 3 OsKitaake07g040501
Deletion Chr12 5372680 5372685 5
Deletion Chr2 5571131 5571143 12 OsKitaake02g076800
Deletion Chr3 5693641 5693653 12
Deletion Chr5 8318904 8318914 10
Deletion Chr4 9307333 9307346 13
Deletion Chr4 9364030 9364037 7 OsKitaake04g049100
Deletion Chr5 13194649 13194665 16
Deletion Chr9 18815001 19067000 251999 41
Deletion Chr12 19176488 19176494 6 OsKitaake12g142601
Deletion Chr6 20374297 20374298 1
Deletion Chr4 24505293 24505298 5
Deletion Chr12 25819936 25819940 4
Deletion Chr6 27923001 27935000 11999 OsKitaake06g253400
Deletion Chr2 35275442 35275444 2
Deletion Chr1 38216458 38216463 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21226792 21226795 2
Insertion Chr8 17352396 17352399 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 26768562 Chr1 23544392
Translocation Chr3 26768648 Chr1 23539904

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14437416	G-T	Homo	INTERGENIC
SBS	Chr1	43614334	A-T	Hetero	INTRON
SBS	Chr2	4905428	T-A	Homo	INTERGENIC
SBS	Chr2	8785966	C-A	Hetero	INTERGENIC
SBS	Chr2	10855856	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g127100
SBS	Chr2	13400000	C-T	Hetero	INTRON
SBS	Chr2	27043038	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	32973809	C-A	Hetero	INTERGENIC
SBS	Chr2	32973811	A-G	Hetero	INTERGENIC
SBS	Chr3	6796256	G-A	Hetero	INTERGENIC
SBS	Chr3	10055215	C-G	Hetero	INTERGENIC
SBS	Chr3	17869674	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g218900
SBS	Chr4	2906750	G-T	Homo	INTERGENIC
SBS	Chr4	3851224	T-C	Homo	INTERGENIC
SBS	Chr4	18221655	C-T	Homo	INTERGENIC
SBS	Chr5	11527048	C-G	Hetero	INTERGENIC
SBS	Chr5	27085904	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	29364763	G-A	Hetero	INTERGENIC
SBS	Chr6	2669063	C-T	Hetero	INTERGENIC
SBS	Chr7	1636978	A-T	Hetero	INTERGENIC
SBS	Chr7	12314062	C-A	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	10497733	C-T	Homo	INTERGENIC
SBS	Chr8	15776513	A-G	Homo	INTRON
SBS	Chr8	22700493	C-A	Homo	INTERGENIC
SBS	Chr8	24612542	A-G	Hetero	INTERGENIC
SBS	Chr8	25358528	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	28409385	G-A	Hetero	INTERGENIC
SBS	Chr9	1639387	G-A	Hetero	INTERGENIC
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	12918855	G-T	Homo	INTERGENIC
SBS	Chr10	10219066	A-T	Hetero	INTERGENIC
SBS	Chr10	15989889	G-A	Hetero	INTERGENIC
SBS	Chr11	130383	C-T	Homo	STOP_GAINED	OsKitaake11g000240
SBS	Chr11	25243381	G-A	Homo	INTERGENIC
SBS	Chr12	16434968	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	383918	383925	7	OsKitaake12g004500
Deletion	Chr12	1516255	1516259	4	OsKitaake12g022800
Deletion	Chr7	3234469	3234472	3	OsKitaake07g040501
Deletion	Chr12	5372680	5372685	5
Deletion	Chr2	5571131	5571143	12	OsKitaake02g076800
Deletion	Chr3	5693641	5693653	12
Deletion	Chr5	8318904	8318914	10
Deletion	Chr4	9307333	9307346	13
Deletion	Chr4	9364030	9364037	7	OsKitaake04g049100
Deletion	Chr5	13194649	13194665	16
Deletion	Chr9	18815001	19067000	251999	41
Deletion	Chr12	19176488	19176494	6	OsKitaake12g142601
Deletion	Chr6	20374297	20374298	1
Deletion	Chr4	24505293	24505298	5
Deletion	Chr12	25819936	25819940	4
Deletion	Chr6	27923001	27935000	11999	OsKitaake06g253400
Deletion	Chr2	35275442	35275444	2
Deletion	Chr1	38216458	38216463	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	26768562	Chr1	23544392
Translocation	Chr3	26768648	Chr1	23539904

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes