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Mutant Information

Mutant Name	FN3541-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3541-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5122366 A-G Homo SYNONYMOUS_CODING
SBS Chr1 12336810 C-A Hetero INTERGENIC
SBS Chr1 14269702 T-A Hetero INTERGENIC
SBS Chr1 18444849 C-T Hetero INTERGENIC
SBS Chr1 42349842 C-T Hetero UTR_5_PRIME
SBS Chr2 14689017 G-A Homo INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr3 27198024 G-A Hetero INTRON
SBS Chr3 31409806 C-A Hetero INTRON
SBS Chr4 2545626 A-T Hetero INTERGENIC
SBS Chr4 5072594 G-A Homo INTERGENIC
SBS Chr4 7772898 G-A Hetero INTERGENIC
SBS Chr5 16043917 G-T Hetero INTERGENIC
SBS Chr5 17397814 G-A Hetero INTERGENIC
SBS Chr6 4125753 T-A Hetero INTERGENIC
SBS Chr6 14108666 T-G Homo INTERGENIC
SBS Chr7 2309962 T-C Hetero INTERGENIC
SBS Chr7 23858502 A-C Hetero INTERGENIC
SBS Chr9 19690115 A-C Hetero INTERGENIC
SBS Chr10 1720064 A-G Hetero INTERGENIC
SBS Chr10 3061755 T-A Homo INTERGENIC
SBS Chr10 9800163 C-T Hetero INTERGENIC
SBS Chr10 10928869 A-T Hetero INTERGENIC
SBS Chr10 12798461 C-T Hetero INTERGENIC
SBS Chr10 14245570 G-A Hetero INTERGENIC
SBS Chr10 20814848 G-A Hetero UTR_3_PRIME
SBS Chr11 9598049 G-C Hetero INTERGENIC
SBS Chr11 12327350 A-T Homo INTERGENIC
SBS Chr11 17681566 G-A Homo INTERGENIC
SBS Chr11 21011924 A-T Hetero INTERGENIC
SBS Chr11 27515426 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g224100
SBS Chr12 9918558 C-T Hetero INTERGENIC
SBS Chr12 11880054 C-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3371365 3371367 2
Deletion Chr10 4438070 4438072 2
Deletion Chr8 9334088 9334090 2
Deletion Chr9 12687280 12687281 1
Deletion Chr1 14607001 14779000 171999 16
Deletion Chr11 14942495 14942496 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 10109737 10215740
Inversion Chr1 14469976 14851628 OsKitaake01g141400
Inversion Chr1 14469989 14851637 OsKitaake01g141400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 17994143 Chr1 14777398 OsKitaake01g167200
Translocation Chr4 17994151 Chr1 14777254 OsKitaake01g167200
Translocation Chr6 26788835 Chr4 34401563 OsKitaake06g239800
Translocation Chr6 26794114 Chr4 34400391 OsKitaake06g239800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5122366	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	12336810	C-A	Hetero	INTERGENIC
SBS	Chr1	14269702	T-A	Hetero	INTERGENIC
SBS	Chr1	18444849	C-T	Hetero	INTERGENIC
SBS	Chr1	42349842	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	14689017	G-A	Homo	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr3	27198024	G-A	Hetero	INTRON
SBS	Chr3	31409806	C-A	Hetero	INTRON
SBS	Chr4	2545626	A-T	Hetero	INTERGENIC
SBS	Chr4	5072594	G-A	Homo	INTERGENIC
SBS	Chr4	7772898	G-A	Hetero	INTERGENIC
SBS	Chr5	16043917	G-T	Hetero	INTERGENIC
SBS	Chr5	17397814	G-A	Hetero	INTERGENIC
SBS	Chr6	4125753	T-A	Hetero	INTERGENIC
SBS	Chr6	14108666	T-G	Homo	INTERGENIC
SBS	Chr7	2309962	T-C	Hetero	INTERGENIC
SBS	Chr7	23858502	A-C	Hetero	INTERGENIC
SBS	Chr9	19690115	A-C	Hetero	INTERGENIC
SBS	Chr10	1720064	A-G	Hetero	INTERGENIC
SBS	Chr10	3061755	T-A	Homo	INTERGENIC
SBS	Chr10	9800163	C-T	Hetero	INTERGENIC
SBS	Chr10	10928869	A-T	Hetero	INTERGENIC
SBS	Chr10	12798461	C-T	Hetero	INTERGENIC
SBS	Chr10	14245570	G-A	Hetero	INTERGENIC
SBS	Chr10	20814848	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	9598049	G-C	Hetero	INTERGENIC
SBS	Chr11	12327350	A-T	Homo	INTERGENIC
SBS	Chr11	17681566	G-A	Homo	INTERGENIC
SBS	Chr11	21011924	A-T	Hetero	INTERGENIC
SBS	Chr11	27515426	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g224100
SBS	Chr12	9918558	C-T	Hetero	INTERGENIC
SBS	Chr12	11880054	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3371365	3371367	2
Deletion	Chr10	4438070	4438072	2
Deletion	Chr8	9334088	9334090	2
Deletion	Chr9	12687280	12687281	1
Deletion	Chr1	14607001	14779000	171999	16
Deletion	Chr11	14942495	14942496	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10109737	10215740
Inversion	Chr1	14469976	14851628	OsKitaake01g141400
Inversion	Chr1	14469989	14851637	OsKitaake01g141400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes