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Mutant Information

Mutant Name	FN360-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN360-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9021164 T-C Hetero INTERGENIC
SBS Chr2 9081300 C-A Homo INTERGENIC
SBS Chr2 28757617 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g289400
SBS Chr3 37743522 C-T Hetero INTERGENIC
SBS Chr4 6206775 A-G Hetero INTERGENIC
SBS Chr4 8290415 T-C Hetero INTRON
SBS Chr4 19855591 A-C Hetero INTRON
SBS Chr4 24660931 A-T Hetero INTERGENIC
SBS Chr5 1918771 T-A Hetero INTERGENIC
SBS Chr5 1918776 G-T Hetero INTERGENIC
SBS Chr6 25669269 G-T Hetero INTERGENIC
SBS Chr6 29823258 C-T Hetero INTERGENIC
SBS Chr7 1728421 G-A Hetero INTERGENIC
SBS Chr7 10462555 A-G Hetero INTERGENIC
SBS Chr7 11242134 G-A Hetero INTERGENIC
SBS Chr10 2344786 G-A Hetero INTERGENIC
SBS Chr10 4275499 A-G Homo INTERGENIC
SBS Chr10 13964708 G-A Hetero INTERGENIC
SBS Chr10 18606914 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 5402402 G-A Hetero INTERGENIC
SBS Chr11 18776315 C-T Hetero INTERGENIC
SBS Chr11 25443128 T-G Hetero INTERGENIC
SBS Chr11 28250917 A-C Hetero INTERGENIC
SBS Chr12 6898644 G-A Hetero INTRON
SBS Chr12 6898647 T-G Hetero INTRON
SBS Chr12 13362162 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g111100

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3971987 3971989 2
Deletion Chr6 4875483 4875487 4
Deletion Chr10 5568143 5568147 4
Deletion Chr1 8110934 8110940 6
Deletion Chr12 9731001 9753000 21999
Deletion Chr4 10800644 10800650 6
Deletion Chr7 13725001 13730000 4999
Deletion Chr2 17930479 17930487 8
Deletion Chr6 18168577 18168579 2
Deletion Chr1 26221440 26221444 4
Deletion Chr1 27962824 27962831 7
Deletion Chr1 29224690 29224692 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18179771 18179773 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3179926 3703774 2
Inversion Chr2 3179928 3703771 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9021164	T-C	Hetero	INTERGENIC
SBS	Chr2	9081300	C-A	Homo	INTERGENIC
SBS	Chr2	28757617	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g289400
SBS	Chr3	37743522	C-T	Hetero	INTERGENIC
SBS	Chr4	6206775	A-G	Hetero	INTERGENIC
SBS	Chr4	8290415	T-C	Hetero	INTRON
SBS	Chr4	19855591	A-C	Hetero	INTRON
SBS	Chr4	24660931	A-T	Hetero	INTERGENIC
SBS	Chr5	1918771	T-A	Hetero	INTERGENIC
SBS	Chr5	1918776	G-T	Hetero	INTERGENIC
SBS	Chr6	25669269	G-T	Hetero	INTERGENIC
SBS	Chr6	29823258	C-T	Hetero	INTERGENIC
SBS	Chr7	1728421	G-A	Hetero	INTERGENIC
SBS	Chr7	10462555	A-G	Hetero	INTERGENIC
SBS	Chr7	11242134	G-A	Hetero	INTERGENIC
SBS	Chr10	2344786	G-A	Hetero	INTERGENIC
SBS	Chr10	4275499	A-G	Homo	INTERGENIC
SBS	Chr10	13964708	G-A	Hetero	INTERGENIC
SBS	Chr10	18606914	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	5402402	G-A	Hetero	INTERGENIC
SBS	Chr11	18776315	C-T	Hetero	INTERGENIC
SBS	Chr11	25443128	T-G	Hetero	INTERGENIC
SBS	Chr11	28250917	A-C	Hetero	INTERGENIC
SBS	Chr12	6898644	G-A	Hetero	INTRON
SBS	Chr12	6898647	T-G	Hetero	INTRON
SBS	Chr12	13362162	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g111100

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3971987	3971989	2
Deletion	Chr6	4875483	4875487	4
Deletion	Chr10	5568143	5568147	4
Deletion	Chr1	8110934	8110940	6
Deletion	Chr12	9731001	9753000	21999
Deletion	Chr4	10800644	10800650	6
Deletion	Chr7	13725001	13730000	4999
Deletion	Chr2	17930479	17930487	8
Deletion	Chr6	18168577	18168579	2
Deletion	Chr1	26221440	26221444	4
Deletion	Chr1	27962824	27962831	7
Deletion	Chr1	29224690	29224692	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3179926	3703774	2
Inversion	Chr2	3179928	3703771	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes