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Mutant Information

Mutant Name	FN367-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN367-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19625774 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g195600
SBS Chr1 26381730 C-T Homo INTERGENIC
SBS Chr1 34074662 G-C Hetero INTERGENIC
SBS Chr2 2325829 C-A Homo INTERGENIC
SBS Chr2 30872788 G-A Hetero INTERGENIC
SBS Chr3 2228663 T-A Homo INTERGENIC
SBS Chr3 2925321 G-T Homo INTERGENIC
SBS Chr3 3795224 T-G Hetero SYNONYMOUS_CODING
SBS Chr3 23728487 T-G Hetero INTRON
SBS Chr3 37335392 T-A Hetero SYNONYMOUS_CODING
SBS Chr4 12762752 G-A Hetero INTRON
SBS Chr4 14202494 G-A Hetero INTERGENIC
SBS Chr4 22211691 G-A Homo INTERGENIC
SBS Chr5 11946037 T-A Homo INTERGENIC
SBS Chr7 10553182 C-T Hetero INTERGENIC
SBS Chr7 16425830 T-C Hetero INTERGENIC
SBS Chr7 27201953 G-T Hetero INTERGENIC
SBS Chr8 9313132 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g085200
SBS Chr8 16074349 C-G Homo INTERGENIC
SBS Chr8 18408179 T-C Homo INTERGENIC
SBS Chr8 19207455 A-T Hetero INTERGENIC
SBS Chr11 1725984 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g023200
SBS Chr12 13290538 A-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr6 63633 63634 1
Deletion Chr1 636613 636617 4
Deletion Chr10 4087686 4087689 3
Deletion Chr1 8456384 8456387 3
Deletion Chr12 11718018 11718183 165
Deletion Chr5 16278134 16278136 2
Deletion Chr2 16455247 16455256 9
Deletion Chr12 19292445 19292448 3
Deletion Chr5 22731742 22731743 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4528057 4528060 2
Insertion Chr3 2925339 2925341 1
Insertion Chr4 9142719 9142722 2
Insertion Chr4 22766864 22766867 2
Insertion Chr6 16647037 16647040 2
Insertion Chr6 30677758 30677761 2
Insertion Chr9 13440123 13440126 2
Insertion Chr10 4492991 4492994 2
Insertion Chr1 24396360 24396363 2

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2930041 3081479 OsKitaake03g041200
Inversion Chr3 2930051 3081481 OsKitaake03g041200
Inversion Chr1 21639519 22453840
Inversion Chr1 21639521 22453843
Inversion Chr3 22688282 22688700 OsKitaake03g245700
Inversion Chr5 23793072 24268427 OsKitaake05g208800
Inversion Chr5 24268422 24281053
Inversion Chr3 35998157 36629351
Inversion Chr3 35998162 36629353

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1319376 Chr1 21639521
Translocation Chr3 1319477 Chr1 22453843

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19625774	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g195600
SBS	Chr1	26381730	C-T	Homo	INTERGENIC
SBS	Chr1	34074662	G-C	Hetero	INTERGENIC
SBS	Chr2	2325829	C-A	Homo	INTERGENIC
SBS	Chr2	30872788	G-A	Hetero	INTERGENIC
SBS	Chr3	2228663	T-A	Homo	INTERGENIC
SBS	Chr3	2925321	G-T	Homo	INTERGENIC
SBS	Chr3	3795224	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	23728487	T-G	Hetero	INTRON
SBS	Chr3	37335392	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	12762752	G-A	Hetero	INTRON
SBS	Chr4	14202494	G-A	Hetero	INTERGENIC
SBS	Chr4	22211691	G-A	Homo	INTERGENIC
SBS	Chr5	11946037	T-A	Homo	INTERGENIC
SBS	Chr7	10553182	C-T	Hetero	INTERGENIC
SBS	Chr7	16425830	T-C	Hetero	INTERGENIC
SBS	Chr7	27201953	G-T	Hetero	INTERGENIC
SBS	Chr8	9313132	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g085200
SBS	Chr8	16074349	C-G	Homo	INTERGENIC
SBS	Chr8	18408179	T-C	Homo	INTERGENIC
SBS	Chr8	19207455	A-T	Hetero	INTERGENIC
SBS	Chr11	1725984	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g023200
SBS	Chr12	13290538	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr6	63633	63634	1
Deletion	Chr1	636613	636617	4
Deletion	Chr10	4087686	4087689	3
Deletion	Chr1	8456384	8456387	3
Deletion	Chr12	11718018	11718183	165
Deletion	Chr5	16278134	16278136	2
Deletion	Chr2	16455247	16455256	9
Deletion	Chr12	19292445	19292448	3
Deletion	Chr5	22731742	22731743	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2930041	3081479	OsKitaake03g041200
Inversion	Chr3	2930051	3081481	OsKitaake03g041200
Inversion	Chr1	21639519	22453840
Inversion	Chr1	21639521	22453843
Inversion	Chr3	22688282	22688700	OsKitaake03g245700
Inversion	Chr5	23793072	24268427	OsKitaake05g208800
Inversion	Chr5	24268422	24281053
Inversion	Chr3	35998157	36629351
Inversion	Chr3	35998162	36629353

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes