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Mutant Information

Mutant Name	FN369-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN369-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7209011 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 30494624 C-T Hetero INTERGENIC
SBS Chr2 7277939 C-G Hetero INTERGENIC
SBS Chr2 13659527 T-A Homo INTERGENIC
SBS Chr2 13659528 C-A Homo INTERGENIC
SBS Chr2 20205595 C-G Hetero INTERGENIC
SBS Chr2 28709212 G-A Hetero INTERGENIC
SBS Chr2 28709218 G-A Hetero INTERGENIC
SBS Chr2 31448678 C-A Hetero INTERGENIC
SBS Chr3 9990901 T-C Hetero INTERGENIC
SBS Chr3 21906862 G-A Hetero INTERGENIC
SBS Chr3 28456692 G-A Homo SYNONYMOUS_CODING
SBS Chr3 31342270 A-C Homo INTERGENIC
SBS Chr4 10541253 A-G Hetero INTRON
SBS Chr5 4100085 A-G Hetero INTERGENIC
SBS Chr5 14248676 T-G Hetero INTERGENIC
SBS Chr6 15347347 A-G Homo INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 16594235 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g136500
SBS Chr7 16791908 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g137600
SBS Chr8 20385783 T-C Hetero INTERGENIC
SBS Chr8 24612597 G-A Hetero INTERGENIC
SBS Chr9 8735556 G-A Hetero INTERGENIC
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr10 3278553 C-T Homo INTERGENIC
SBS Chr11 9730575 A-T Hetero INTERGENIC
SBS Chr11 10847403 G-A Hetero INTERGENIC
SBS Chr11 12865509 G-C Hetero INTERGENIC
SBS Chr12 9611462 G-T Homo INTERGENIC
SBS Chr12 16248966 T-A Hetero INTERGENIC
SBS Chr12 18079586 C-T Homo INTERGENIC
SBS Chr12 18437907 A-T Homo INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC
SBS Chr12 25985218 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1324917 1324927 10
Deletion Chr4 2036001 2254000 217999 9
Deletion Chr12 6526717 6526729 12
Deletion Chr12 9355001 9577000 221999 14
Deletion Chr7 9778474 9778479 5
Deletion Chr2 11309880 11309881 1
Deletion Chr7 13713001 13730000 16999
Deletion Chr9 14408820 14408822 2
Deletion Chr11 16359930 16359936 6
Deletion Chr4 17767337 17767450 113
Deletion Chr12 18437377 18437395 18
Deletion Chr1 25340858 25340859 1 OsKitaake01g245300
Deletion Chr6 26206337 26206345 8
Deletion Chr11 27675890 27675891 1
Deletion Chr5 27687329 27687339 10
Deletion Chr6 29809083 29809088 5 OsKitaake06g278700
Deletion Chr1 36585001 36620000 34999 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 642505 642508 2
Insertion Chr7 28346703 28346706 2
Insertion Chr1 14631562 14631614 51

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 2259472 2833011 OsKitaake02g040500
Inversion Chr2 2259487 2833017 OsKitaake02g040500
Inversion Chr12 5247321 6139892 OsKitaake12g066400
Inversion Chr12 9355846 9866122 OsKitaake12g091200
Inversion Chr12 9575955 9866123

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6139548 Chr11 1217823 OsKitaake11g014500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7209011	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	30494624	C-T	Hetero	INTERGENIC
SBS	Chr2	7277939	C-G	Hetero	INTERGENIC
SBS	Chr2	13659527	T-A	Homo	INTERGENIC
SBS	Chr2	13659528	C-A	Homo	INTERGENIC
SBS	Chr2	20205595	C-G	Hetero	INTERGENIC
SBS	Chr2	28709212	G-A	Hetero	INTERGENIC
SBS	Chr2	28709218	G-A	Hetero	INTERGENIC
SBS	Chr2	31448678	C-A	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Hetero	INTERGENIC
SBS	Chr3	21906862	G-A	Hetero	INTERGENIC
SBS	Chr3	28456692	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	31342270	A-C	Homo	INTERGENIC
SBS	Chr4	10541253	A-G	Hetero	INTRON
SBS	Chr5	4100085	A-G	Hetero	INTERGENIC
SBS	Chr5	14248676	T-G	Hetero	INTERGENIC
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	16594235	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g136500
SBS	Chr7	16791908	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g137600
SBS	Chr8	20385783	T-C	Hetero	INTERGENIC
SBS	Chr8	24612597	G-A	Hetero	INTERGENIC
SBS	Chr9	8735556	G-A	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr10	3278553	C-T	Homo	INTERGENIC
SBS	Chr11	9730575	A-T	Hetero	INTERGENIC
SBS	Chr11	10847403	G-A	Hetero	INTERGENIC
SBS	Chr11	12865509	G-C	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Homo	INTERGENIC
SBS	Chr12	16248966	T-A	Hetero	INTERGENIC
SBS	Chr12	18079586	C-T	Homo	INTERGENIC
SBS	Chr12	18437907	A-T	Homo	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC
SBS	Chr12	25985218	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1324917	1324927	10
Deletion	Chr4	2036001	2254000	217999	9
Deletion	Chr12	6526717	6526729	12
Deletion	Chr12	9355001	9577000	221999	14
Deletion	Chr7	9778474	9778479	5
Deletion	Chr2	11309880	11309881	1
Deletion	Chr7	13713001	13730000	16999
Deletion	Chr9	14408820	14408822	2
Deletion	Chr11	16359930	16359936	6
Deletion	Chr4	17767337	17767450	113
Deletion	Chr12	18437377	18437395	18
Deletion	Chr1	25340858	25340859	1	OsKitaake01g245300
Deletion	Chr6	26206337	26206345	8
Deletion	Chr11	27675890	27675891	1
Deletion	Chr5	27687329	27687339	10
Deletion	Chr6	29809083	29809088	5	OsKitaake06g278700
Deletion	Chr1	36585001	36620000	34999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	2259472	2833011	OsKitaake02g040500
Inversion	Chr2	2259487	2833017	OsKitaake02g040500
Inversion	Chr12	5247321	6139892	OsKitaake12g066400
Inversion	Chr12	9355846	9866122	OsKitaake12g091200
Inversion	Chr12	9575955	9866123

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes