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Mutant Information

Mutant Name	FN3709-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3709-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1580062 A-T Hetero INTERGENIC
SBS Chr1 1580063 C-T Hetero INTERGENIC
SBS Chr1 10251266 T-C Hetero INTERGENIC
SBS Chr1 10251267 G-T Hetero INTERGENIC
SBS Chr1 13404482 C-T Hetero INTERGENIC
SBS Chr1 21355866 T-C Homo INTRON
SBS Chr2 10682589 G-A Hetero INTERGENIC
SBS Chr2 34258009 G-A Homo INTERGENIC
SBS Chr3 19160049 G-A Hetero INTERGENIC
SBS Chr3 27089042 A-T Hetero INTERGENIC
SBS Chr3 31950867 G-A Homo INTERGENIC
SBS Chr4 5903906 G-A Homo INTRON
SBS Chr4 7457636 G-A Homo INTERGENIC
SBS Chr4 9973270 T-G Hetero INTERGENIC
SBS Chr4 20353240 G-T Hetero INTERGENIC
SBS Chr4 31238069 G-A Hetero INTERGENIC
SBS Chr4 31751549 T-A Hetero INTERGENIC
SBS Chr4 33700451 G-A Hetero INTRON
SBS Chr4 33700452 G-A Hetero INTRON
SBS Chr5 6299728 G-A Hetero INTERGENIC
SBS Chr5 14325118 A-T Hetero INTERGENIC
SBS Chr5 15805970 C-T Hetero INTERGENIC
SBS Chr6 20908273 C-G Homo INTERGENIC
SBS Chr7 637053 G-A Hetero INTERGENIC
SBS Chr8 9396418 C-T Hetero INTERGENIC
SBS Chr8 18148334 T-G Hetero INTERGENIC
SBS Chr8 18657402 G-A Hetero INTERGENIC
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr9 4824377 G-A Hetero INTERGENIC
SBS Chr9 8565424 T-A Hetero INTERGENIC
SBS Chr9 13653401 A-C Hetero INTERGENIC
SBS Chr10 3384194 C-T Homo INTERGENIC
SBS Chr10 18184944 C-A Homo NON_SYNONYMOUS_CODING OsKitaake10g128500
SBS Chr11 1269901 G-C Homo INTERGENIC
SBS Chr11 16828189 C-G Hetero UTR_5_PRIME
SBS Chr11 22987907 G-A Hetero INTERGENIC
SBS Chr11 22987914 A-G Hetero INTERGENIC
SBS Chr12 10279682 A-T Homo INTERGENIC
SBS Chr12 10279683 T-A Homo INTERGENIC
SBS Chr12 13303223 G-T Homo INTERGENIC
SBS Chr12 13884889 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4001112 4001118 6
Deletion Chr6 6517168 6517170 2
Deletion Chr4 7387268 7387274 6
Deletion Chr8 7865628 7865632 4
Deletion Chr4 8825478 8825501 23
Deletion Chr5 8908001 8960000 51999 4
Deletion Chr5 8973001 9316000 342999 23
Deletion Chr12 9104001 9142000 37999 2
Deletion Chr4 16113649 16113653 4
Deletion Chr4 16964218 16964223 5
Deletion Chr1 17199878 17200043 165
Deletion Chr1 20979837 20979840 3
Deletion Chr3 23465398 23465399 1
Deletion Chr7 23857805 23857814 9
Deletion Chr3 28339160 28339197 37
Deletion Chr3 35295474 35295483 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32477520 32477523 2
Insertion Chr3 36859442 36859446 3 OsKitaake03g411800
Insertion Chr8 3245576 3245579 2
Insertion Chr11 7413998 7414001 2
Insertion Chr12 21003347 21003350 2
Insertion Chr12 26729664 26729671 6

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5120746 5736532 OsKitaake04g024400
Inversion Chr12 9105020 9385880 OsKitaake12g091500
Inversion Chr12 9142735 9158199
Inversion Chr12 9385901 9711155 2
Inversion Chr6 21326887 22324525 OsKitaake06g189100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 21326890 Chr3 1397254 2
Translocation Chr12 26008715 Chr3 1397481 2
Translocation Chr5 28857431 Chr3 1397483 OsKitaake03g020300
Translocation Chr5 28858026 Chr3 1388455

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1580062	A-T	Hetero	INTERGENIC
SBS	Chr1	1580063	C-T	Hetero	INTERGENIC
SBS	Chr1	10251266	T-C	Hetero	INTERGENIC
SBS	Chr1	10251267	G-T	Hetero	INTERGENIC
SBS	Chr1	13404482	C-T	Hetero	INTERGENIC
SBS	Chr1	21355866	T-C	Homo	INTRON
SBS	Chr2	10682589	G-A	Hetero	INTERGENIC
SBS	Chr2	34258009	G-A	Homo	INTERGENIC
SBS	Chr3	19160049	G-A	Hetero	INTERGENIC
SBS	Chr3	27089042	A-T	Hetero	INTERGENIC
SBS	Chr3	31950867	G-A	Homo	INTERGENIC
SBS	Chr4	5903906	G-A	Homo	INTRON
SBS	Chr4	7457636	G-A	Homo	INTERGENIC
SBS	Chr4	9973270	T-G	Hetero	INTERGENIC
SBS	Chr4	20353240	G-T	Hetero	INTERGENIC
SBS	Chr4	31238069	G-A	Hetero	INTERGENIC
SBS	Chr4	31751549	T-A	Hetero	INTERGENIC
SBS	Chr4	33700451	G-A	Hetero	INTRON
SBS	Chr4	33700452	G-A	Hetero	INTRON
SBS	Chr5	6299728	G-A	Hetero	INTERGENIC
SBS	Chr5	14325118	A-T	Hetero	INTERGENIC
SBS	Chr5	15805970	C-T	Hetero	INTERGENIC
SBS	Chr6	20908273	C-G	Homo	INTERGENIC
SBS	Chr7	637053	G-A	Hetero	INTERGENIC
SBS	Chr8	9396418	C-T	Hetero	INTERGENIC
SBS	Chr8	18148334	T-G	Hetero	INTERGENIC
SBS	Chr8	18657402	G-A	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr9	4824377	G-A	Hetero	INTERGENIC
SBS	Chr9	8565424	T-A	Hetero	INTERGENIC
SBS	Chr9	13653401	A-C	Hetero	INTERGENIC
SBS	Chr10	3384194	C-T	Homo	INTERGENIC
SBS	Chr10	18184944	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g128500
SBS	Chr11	1269901	G-C	Homo	INTERGENIC
SBS	Chr11	16828189	C-G	Hetero	UTR_5_PRIME
SBS	Chr11	22987907	G-A	Hetero	INTERGENIC
SBS	Chr11	22987914	A-G	Hetero	INTERGENIC
SBS	Chr12	10279682	A-T	Homo	INTERGENIC
SBS	Chr12	10279683	T-A	Homo	INTERGENIC
SBS	Chr12	13303223	G-T	Homo	INTERGENIC
SBS	Chr12	13884889	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4001112	4001118	6
Deletion	Chr6	6517168	6517170	2
Deletion	Chr4	7387268	7387274	6
Deletion	Chr8	7865628	7865632	4
Deletion	Chr4	8825478	8825501	23
Deletion	Chr5	8908001	8960000	51999	4
Deletion	Chr5	8973001	9316000	342999	23
Deletion	Chr12	9104001	9142000	37999	2
Deletion	Chr4	16113649	16113653	4
Deletion	Chr4	16964218	16964223	5
Deletion	Chr1	17199878	17200043	165
Deletion	Chr1	20979837	20979840	3
Deletion	Chr3	23465398	23465399	1
Deletion	Chr7	23857805	23857814	9
Deletion	Chr3	28339160	28339197	37
Deletion	Chr3	35295474	35295483	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5120746	5736532	OsKitaake04g024400
Inversion	Chr12	9105020	9385880	OsKitaake12g091500
Inversion	Chr12	9142735	9158199
Inversion	Chr12	9385901	9711155	2
Inversion	Chr6	21326887	22324525	OsKitaake06g189100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes