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Mutant Information

Mutant Name	FN3715-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3715-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7588492 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 8459638 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g105300
SBS Chr1 15214612 G-A Hetero INTERGENIC
SBS Chr1 20491119 A-G Hetero INTERGENIC
SBS Chr1 20627694 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g201400
SBS Chr1 26709615 T-C Hetero INTERGENIC
SBS Chr1 36913911 G-A Homo INTERGENIC
SBS Chr1 40605225 A-T Hetero INTRON
SBS Chr2 14741745 G-A Hetero INTERGENIC
SBS Chr2 23147278 G-A Hetero INTERGENIC
SBS Chr2 26967511 T-C Hetero INTRON
SBS Chr2 28537426 G-T Hetero INTRON
SBS Chr2 30038105 T-A Hetero INTERGENIC
SBS Chr3 4310240 T-A Hetero INTERGENIC
SBS Chr3 10367166 G-A Hetero UTR_5_PRIME
SBS Chr3 19836019 G-T Homo INTERGENIC
SBS Chr3 25869481 A-G Homo INTERGENIC
SBS Chr4 240307 A-G Homo INTERGENIC
SBS Chr4 4952018 C-A Hetero INTERGENIC
SBS Chr4 9354946 G-A Hetero INTERGENIC
SBS Chr4 12150321 T-A Hetero INTERGENIC
SBS Chr5 96773 G-A Hetero INTERGENIC
SBS Chr5 10530484 G-A Homo INTERGENIC
SBS Chr6 1028958 G-A Homo INTERGENIC
SBS Chr6 3197866 C-G Homo UTR_5_PRIME
SBS Chr6 14603260 A-G Hetero INTERGENIC
SBS Chr6 18054490 T-C Hetero INTERGENIC
SBS Chr6 24809201 C-A Hetero SYNONYMOUS_CODING
SBS Chr6 24809202 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g220300
SBS Chr7 1639663 C-T Hetero INTERGENIC
SBS Chr7 8459035 C-T Homo INTERGENIC
SBS Chr7 20142801 A-T Homo NON_SYNONYMOUS_CODING OsKitaake07g165400
SBS Chr8 16536435 G-C Hetero INTERGENIC
SBS Chr8 18568499 G-A Hetero INTERGENIC
SBS Chr8 20004782 T-A Hetero INTERGENIC
SBS Chr8 28580596 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g244900
SBS Chr9 4754177 T-C Homo INTERGENIC
SBS Chr9 9353597 G-T Homo INTERGENIC
SBS Chr9 11420789 G-A Hetero INTERGENIC
SBS Chr9 17025283 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g125900
SBS Chr10 2650310 A-T Hetero INTERGENIC
SBS Chr10 4688419 C-G Hetero INTERGENIC
SBS Chr10 16614956 C-A Hetero UTR_5_PRIME
SBS Chr10 18771988 C-A Hetero INTERGENIC
SBS Chr10 21785843 C-T Hetero INTERGENIC
SBS Chr10 23643643 T-A Hetero INTERGENIC
SBS Chr11 5585241 A-T Hetero INTERGENIC
SBS Chr11 9065150 A-C Hetero INTERGENIC
SBS Chr11 10172301 C-T Homo INTERGENIC
SBS Chr11 18872376 G-A Hetero INTRON
SBS Chr11 19635710 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g153200
SBS Chr11 24919116 A-G Hetero INTERGENIC
SBS Chr12 5033528 G-T Hetero INTERGENIC
SBS Chr12 6869661 G-A Hetero INTERGENIC
SBS Chr12 21357834 T-C Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 758001 1027000 268999 43
Deletion Chr6 3827517 3827529 12
Deletion Chr2 4029001 4075000 45999 5
Deletion Chr12 4831741 4831742 1
Deletion Chr3 5455052 5455054 2
Deletion Chr7 6308112 6308118 6
Deletion Chr4 7807563 7807564 1
Deletion Chr3 10016890 10016902 12
Deletion Chr1 10541945 10541947 2
Deletion Chr8 10822444 10822448 4
Deletion Chr11 12757001 12778000 20999
Deletion Chr3 15108119 15108129 10
Deletion Chr12 17655925 17655935 10
Deletion Chr6 17914410 17914413 3
Deletion Chr12 20455001 20469000 13999
Deletion Chr6 20663857 20663859 2
Deletion Chr8 21137057 21137059 2
Deletion Chr1 21311270 21311278 8
Deletion Chr4 23126672 23126674 2
Deletion Chr11 24295840 24295855 15
Deletion Chr11 24618574 24618585 11
Deletion Chr8 26366761 26366768 7
Deletion Chr2 26379478 26379479 1
Deletion Chr8 27068883 27068892 9 OsKitaake08g220400
Deletion Chr8 27706574 27706576 2
Deletion Chr2 33529338 33529346 8
Deletion Chr4 33903931 33903943 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29548022 29548024 1
Insertion Chr7 6393556 6393559 2
Insertion Chr3 16744382 16744384 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1382566 1860488
Inversion Chr7 1382570 1860489
Inversion Chr1 5073730 5250008 OsKitaake01g066800
Inversion Chr1 5073733 5250013 OsKitaake01g066800
Inversion Chr1 17797405 18666882 OsKitaake01g186900
Inversion Chr1 17797412 18671623
Inversion Chr6 24089617 24746722 OsKitaake06g213203
Inversion Chr6 24089632 24746771 OsKitaake06g213203

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1849194 Chr4 35066677
Translocation Chr11 1850625 Chr1 18666881 OsKitaake01g186900
Translocation Chr4 35066676 Chr1 18671628

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7588492	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	8459638	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g105300
SBS	Chr1	15214612	G-A	Hetero	INTERGENIC
SBS	Chr1	20491119	A-G	Hetero	INTERGENIC
SBS	Chr1	20627694	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g201400
SBS	Chr1	26709615	T-C	Hetero	INTERGENIC
SBS	Chr1	36913911	G-A	Homo	INTERGENIC
SBS	Chr1	40605225	A-T	Hetero	INTRON
SBS	Chr2	14741745	G-A	Hetero	INTERGENIC
SBS	Chr2	23147278	G-A	Hetero	INTERGENIC
SBS	Chr2	26967511	T-C	Hetero	INTRON
SBS	Chr2	28537426	G-T	Hetero	INTRON
SBS	Chr2	30038105	T-A	Hetero	INTERGENIC
SBS	Chr3	4310240	T-A	Hetero	INTERGENIC
SBS	Chr3	10367166	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	19836019	G-T	Homo	INTERGENIC
SBS	Chr3	25869481	A-G	Homo	INTERGENIC
SBS	Chr4	240307	A-G	Homo	INTERGENIC
SBS	Chr4	4952018	C-A	Hetero	INTERGENIC
SBS	Chr4	9354946	G-A	Hetero	INTERGENIC
SBS	Chr4	12150321	T-A	Hetero	INTERGENIC
SBS	Chr5	96773	G-A	Hetero	INTERGENIC
SBS	Chr5	10530484	G-A	Homo	INTERGENIC
SBS	Chr6	1028958	G-A	Homo	INTERGENIC
SBS	Chr6	3197866	C-G	Homo	UTR_5_PRIME
SBS	Chr6	14603260	A-G	Hetero	INTERGENIC
SBS	Chr6	18054490	T-C	Hetero	INTERGENIC
SBS	Chr6	24809201	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	24809202	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g220300
SBS	Chr7	1639663	C-T	Hetero	INTERGENIC
SBS	Chr7	8459035	C-T	Homo	INTERGENIC
SBS	Chr7	20142801	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g165400
SBS	Chr8	16536435	G-C	Hetero	INTERGENIC
SBS	Chr8	18568499	G-A	Hetero	INTERGENIC
SBS	Chr8	20004782	T-A	Hetero	INTERGENIC
SBS	Chr8	28580596	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g244900
SBS	Chr9	4754177	T-C	Homo	INTERGENIC
SBS	Chr9	9353597	G-T	Homo	INTERGENIC
SBS	Chr9	11420789	G-A	Hetero	INTERGENIC
SBS	Chr9	17025283	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g125900
SBS	Chr10	2650310	A-T	Hetero	INTERGENIC
SBS	Chr10	4688419	C-G	Hetero	INTERGENIC
SBS	Chr10	16614956	C-A	Hetero	UTR_5_PRIME
SBS	Chr10	18771988	C-A	Hetero	INTERGENIC
SBS	Chr10	21785843	C-T	Hetero	INTERGENIC
SBS	Chr10	23643643	T-A	Hetero	INTERGENIC
SBS	Chr11	5585241	A-T	Hetero	INTERGENIC
SBS	Chr11	9065150	A-C	Hetero	INTERGENIC
SBS	Chr11	10172301	C-T	Homo	INTERGENIC
SBS	Chr11	18872376	G-A	Hetero	INTRON
SBS	Chr11	19635710	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g153200
SBS	Chr11	24919116	A-G	Hetero	INTERGENIC
SBS	Chr12	5033528	G-T	Hetero	INTERGENIC
SBS	Chr12	6869661	G-A	Hetero	INTERGENIC
SBS	Chr12	21357834	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	758001	1027000	268999	43
Deletion	Chr6	3827517	3827529	12
Deletion	Chr2	4029001	4075000	45999	5
Deletion	Chr12	4831741	4831742	1
Deletion	Chr3	5455052	5455054	2
Deletion	Chr7	6308112	6308118	6
Deletion	Chr4	7807563	7807564	1
Deletion	Chr3	10016890	10016902	12
Deletion	Chr1	10541945	10541947	2
Deletion	Chr8	10822444	10822448	4
Deletion	Chr11	12757001	12778000	20999
Deletion	Chr3	15108119	15108129	10
Deletion	Chr12	17655925	17655935	10
Deletion	Chr6	17914410	17914413	3
Deletion	Chr12	20455001	20469000	13999
Deletion	Chr6	20663857	20663859	2
Deletion	Chr8	21137057	21137059	2
Deletion	Chr1	21311270	21311278	8
Deletion	Chr4	23126672	23126674	2
Deletion	Chr11	24295840	24295855	15
Deletion	Chr11	24618574	24618585	11
Deletion	Chr8	26366761	26366768	7
Deletion	Chr2	26379478	26379479	1
Deletion	Chr8	27068883	27068892	9	OsKitaake08g220400
Deletion	Chr8	27706574	27706576	2
Deletion	Chr2	33529338	33529346	8
Deletion	Chr4	33903931	33903943	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1382566	1860488
Inversion	Chr7	1382570	1860489
Inversion	Chr1	5073730	5250008	OsKitaake01g066800
Inversion	Chr1	5073733	5250013	OsKitaake01g066800
Inversion	Chr1	17797405	18666882	OsKitaake01g186900
Inversion	Chr1	17797412	18671623
Inversion	Chr6	24089617	24746722	OsKitaake06g213203
Inversion	Chr6	24089632	24746771	OsKitaake06g213203

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes