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Mutant Information

Mutant Name	FN3740-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3740-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18699383 T-C Homo INTRON
SBS Chr1 26852743 C-G Homo INTERGENIC
SBS Chr1 38404582 A-G Hetero INTERGENIC
SBS Chr2 2802167 C-T Hetero UTR_3_PRIME
SBS Chr2 4188441 T-C Hetero INTRON
SBS Chr2 22021996 A-G Hetero INTRON
SBS Chr2 25169502 C-G Hetero INTERGENIC
SBS Chr2 29946999 A-G Hetero INTERGENIC
SBS Chr3 27854142 A-C Hetero INTERGENIC
SBS Chr3 29800083 C-A Hetero INTRON
SBS Chr3 29906777 A-G Hetero INTERGENIC
SBS Chr3 30509402 T-A Hetero INTERGENIC
SBS Chr3 33398611 C-T Hetero INTERGENIC
SBS Chr4 8052088 C-A Hetero INTERGENIC
SBS Chr4 11135228 C-G Hetero INTERGENIC
SBS Chr4 34171725 G-C Homo START_GAINED
SBS Chr4 35117181 C-T Hetero INTERGENIC
SBS Chr5 8245358 G-A Hetero INTERGENIC
SBS Chr5 13005216 T-C Hetero INTERGENIC
SBS Chr5 13936015 G-A Hetero INTERGENIC
SBS Chr5 16777882 G-A Hetero INTERGENIC
SBS Chr5 20349755 T-A Hetero INTERGENIC
SBS Chr6 14124604 T-G Homo INTERGENIC
SBS Chr7 11385619 T-G Homo INTERGENIC
SBS Chr8 11322677 C-T Hetero INTERGENIC
SBS Chr8 19483964 T-C Hetero INTERGENIC
SBS Chr9 9835332 G-C Homo INTERGENIC
SBS Chr9 15240236 T-A Hetero STOP_GAINED OsKitaake09g106500
SBS Chr9 21091933 G-A Hetero INTERGENIC
SBS Chr10 4634826 C-T Homo INTERGENIC
SBS Chr10 8887053 G-A Hetero INTERGENIC
SBS Chr10 15345953 C-T Homo INTERGENIC
SBS Chr10 23456735 C-T Homo SYNONYMOUS_CODING
SBS Chr11 21622265 A-T Hetero INTERGENIC
SBS Chr11 23062471 G-A Hetero INTERGENIC
SBS Chr11 25065715 C-T Hetero UTR_3_PRIME
SBS Chr12 267986 T-C Homo INTERGENIC
SBS Chr12 16030184 C-T Homo INTERGENIC
SBS Chr12 20047889 G-A Homo INTERGENIC
SBS Chr12 25912627 C-G Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1814071 1814075 4
Deletion Chr9 2889127 2889128 1
Deletion Chr10 3432214 3432215 1
Deletion Chr6 6262179 6262186 7
Deletion Chr3 7342225 7342231 6
Deletion Chr11 8648246 8648248 2
Deletion Chr8 9521873 9521878 5
Deletion Chr2 9956682 9956685 3
Deletion Chr4 12855161 12855163 2
Deletion Chr11 18197982 18197983 1
Deletion Chr7 18303562 18303566 4
Deletion Chr1 22260594 22260609 15
Deletion Chr2 22458802 22458804 2
Deletion Chr1 28691879 28691897 18
Deletion Chr6 29237008 29237013 5
Deletion Chr3 37731440 37731442 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 16090905 16281157
Inversion Chr1 16090916 16281157
Inversion Chr8 24204719 24275754 OsKitaake08g187700
Inversion Chr8 24204740 24275896

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18699383	T-C	Homo	INTRON
SBS	Chr1	26852743	C-G	Homo	INTERGENIC
SBS	Chr1	38404582	A-G	Hetero	INTERGENIC
SBS	Chr2	2802167	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	4188441	T-C	Hetero	INTRON
SBS	Chr2	22021996	A-G	Hetero	INTRON
SBS	Chr2	25169502	C-G	Hetero	INTERGENIC
SBS	Chr2	29946999	A-G	Hetero	INTERGENIC
SBS	Chr3	27854142	A-C	Hetero	INTERGENIC
SBS	Chr3	29800083	C-A	Hetero	INTRON
SBS	Chr3	29906777	A-G	Hetero	INTERGENIC
SBS	Chr3	30509402	T-A	Hetero	INTERGENIC
SBS	Chr3	33398611	C-T	Hetero	INTERGENIC
SBS	Chr4	8052088	C-A	Hetero	INTERGENIC
SBS	Chr4	11135228	C-G	Hetero	INTERGENIC
SBS	Chr4	34171725	G-C	Homo	START_GAINED
SBS	Chr4	35117181	C-T	Hetero	INTERGENIC
SBS	Chr5	8245358	G-A	Hetero	INTERGENIC
SBS	Chr5	13005216	T-C	Hetero	INTERGENIC
SBS	Chr5	13936015	G-A	Hetero	INTERGENIC
SBS	Chr5	16777882	G-A	Hetero	INTERGENIC
SBS	Chr5	20349755	T-A	Hetero	INTERGENIC
SBS	Chr6	14124604	T-G	Homo	INTERGENIC
SBS	Chr7	11385619	T-G	Homo	INTERGENIC
SBS	Chr8	11322677	C-T	Hetero	INTERGENIC
SBS	Chr8	19483964	T-C	Hetero	INTERGENIC
SBS	Chr9	9835332	G-C	Homo	INTERGENIC
SBS	Chr9	15240236	T-A	Hetero	STOP_GAINED	OsKitaake09g106500
SBS	Chr9	21091933	G-A	Hetero	INTERGENIC
SBS	Chr10	4634826	C-T	Homo	INTERGENIC
SBS	Chr10	8887053	G-A	Hetero	INTERGENIC
SBS	Chr10	15345953	C-T	Homo	INTERGENIC
SBS	Chr10	23456735	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	21622265	A-T	Hetero	INTERGENIC
SBS	Chr11	23062471	G-A	Hetero	INTERGENIC
SBS	Chr11	25065715	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	267986	T-C	Homo	INTERGENIC
SBS	Chr12	16030184	C-T	Homo	INTERGENIC
SBS	Chr12	20047889	G-A	Homo	INTERGENIC
SBS	Chr12	25912627	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1814071	1814075	4
Deletion	Chr9	2889127	2889128	1
Deletion	Chr10	3432214	3432215	1
Deletion	Chr6	6262179	6262186	7
Deletion	Chr3	7342225	7342231	6
Deletion	Chr11	8648246	8648248	2
Deletion	Chr8	9521873	9521878	5
Deletion	Chr2	9956682	9956685	3
Deletion	Chr4	12855161	12855163	2
Deletion	Chr11	18197982	18197983	1
Deletion	Chr7	18303562	18303566	4
Deletion	Chr1	22260594	22260609	15
Deletion	Chr2	22458802	22458804	2
Deletion	Chr1	28691879	28691897	18
Deletion	Chr6	29237008	29237013	5
Deletion	Chr3	37731440	37731442	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16090905	16281157
Inversion	Chr1	16090916	16281157
Inversion	Chr8	24204719	24275754	OsKitaake08g187700
Inversion	Chr8	24204740	24275896

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes