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| Mutant Information |
|---|
| Mutant Name | FN378-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN378-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6369766 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 14017902 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16861775 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23672561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37824670 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 33589377 | T-A | Homo | SPLICE_SITE_REGION | |
| SBS | Chr3 | 4961395 | G-A | Homo | INTRON | |
| SBS | Chr3 | 12111593 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 26107124 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 7303872 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15281572 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7369191 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15689230 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15924300 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28968642 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 639211 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5549487 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 6496844 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16998377 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 602383 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 15634417 | T-C | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 452192 | 452194 | 2 | |
| Deletion | Chr4 | 1452437 | 1452441 | 4 | |
| Deletion | Chr4 | 3456228 | 3456355 | 127 | |
| Deletion | Chr6 | 13414983 | 13414990 | 7 | |
| Deletion | Chr12 | 23319238 | 23319240 | 2 | |
| Deletion | Chr12 | 25851782 | 25851786 | 4 | OsKitaake12g213600 |
| Deletion | Chr1 | 37496351 | 37496355 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 7585156 | 7585159 | 2 | |
| Insertion | Chr2 | 35328984 | 35328987 | 2 | |
| Insertion | Chr4 | 10143274 | 10143276 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 27838904 | 28606067 | 2 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 3021038 | Chr1 | 36541391 | OsKitaake01g388200 |
| Translocation | Chr2 | 3021338 | Chr1 | 36541408 | OsKitaake01g388200 |
| Translocation | Chr11 | 27254844 | Chr1 | 29409845 | 2 |
| Translocation | Chr11 | 28606058 | Chr1 | 29415079 | OsKitaake11g234400 |
| Translocation | Chr4 | 28839002 | Chr1 | 29409484 | 2 |
| Translocation | Chr4 | 28839008 | Chr1 | 29409835 | 2 |