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Mutant Information

Mutant Name	FN3799-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3799-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11781704 C-T Hetero INTERGENIC
SBS Chr1 13130461 C-T Hetero INTERGENIC
SBS Chr1 14425914 C-A Hetero INTERGENIC
SBS Chr1 23518882 T-C Homo INTERGENIC
SBS Chr1 32117323 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g323600
SBS Chr1 36148596 T-C Hetero INTERGENIC
SBS Chr1 36148773 T-A Hetero INTERGENIC
SBS Chr2 29137106 A-C Homo INTERGENIC
SBS Chr3 908010 G-C Hetero UTR_3_PRIME
SBS Chr3 1855948 C-G Hetero UTR_5_PRIME
SBS Chr3 19755630 T-A Hetero INTERGENIC
SBS Chr3 26573003 C-T Hetero INTERGENIC
SBS Chr3 32616361 A-G Hetero INTRON
SBS Chr3 34904982 T-A Homo INTERGENIC
SBS Chr3 35644584 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g391300
SBS Chr4 17667782 C-T Homo INTERGENIC
SBS Chr4 28145486 G-C Hetero INTERGENIC
SBS Chr4 34748867 C-T Hetero INTERGENIC
SBS Chr4 34939242 T-C Homo INTERGENIC
SBS Chr5 895811 G-A Hetero INTERGENIC
SBS Chr5 895812 G-A Hetero INTERGENIC
SBS Chr5 1395073 A-G Homo INTERGENIC
SBS Chr5 3537880 C-T Hetero INTERGENIC
SBS Chr6 2380420 C-A Hetero INTERGENIC
SBS Chr6 5739051 G-A Homo INTERGENIC
SBS Chr6 21543298 C-T Hetero INTERGENIC
SBS Chr6 21835938 G-A Hetero INTERGENIC
SBS Chr6 23625471 T-A Hetero SYNONYMOUS_CODING
SBS Chr6 30681111 C-T Hetero UTR_3_PRIME
SBS Chr7 11301897 C-T Hetero INTERGENIC
SBS Chr7 22288022 C-A Hetero INTERGENIC
SBS Chr7 22406973 C-G Homo INTERGENIC
SBS Chr8 1330020 G-A Hetero INTERGENIC
SBS Chr8 2057882 T-C Hetero INTERGENIC
SBS Chr8 4353286 A-T Hetero INTERGENIC
SBS Chr8 20644049 T-C Hetero UTR_3_PRIME
SBS Chr8 28621364 T-C Hetero INTERGENIC
SBS Chr9 6685489 C-T Hetero INTERGENIC
SBS Chr10 14602746 A-G Hetero INTERGENIC
SBS Chr11 16287065 G-C Hetero INTERGENIC
SBS Chr11 21493639 G-T Hetero INTERGENIC
SBS Chr12 8555315 G-A Hetero INTERGENIC
SBS Chr12 10235484 C-A Hetero INTERGENIC
SBS Chr12 13303749 G-A Hetero INTERGENIC
SBS Chr12 13502263 T-C Hetero INTERGENIC
SBS Chr12 17590238 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1520423 1520424 1
Deletion Chr11 5408225 5408226 1
Deletion Chr1 6988001 7009000 20999 2
Deletion Chr4 9777594 9777600 6
Deletion Chr4 10396607 10396608 1 OsKitaake04g055500
Deletion Chr3 11380872 11380873 1
Deletion Chr4 12420556 12420568 12
Deletion Chr6 13907491 13907503 12
Deletion Chr9 14630001 14740000 109999 12
Deletion Chr9 14746001 15053000 306999 31
Deletion Chr4 14795636 14795645 9
Deletion Chr7 17524091 17524102 11
Deletion Chr7 25406639 25406645 6
Deletion Chr1 25693350 25693361 11
Deletion Chr2 26902542 26902549 7
Deletion Chr12 26910186 26910198 12 OsKitaake12g225100

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16374204 16374208 3
Insertion Chr3 35917621 35917624 2
Insertion Chr8 26914061 26914065 3
Insertion Chr9 20801238 20801241 2
Insertion Chr11 28172320 28172323 2
Insertion Chr12 3464414 3464417 2
Insertion Chr3 20044043 20044045 1
Insertion Chr8 2514933 2514935 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 12628579 12675366
Inversion Chr10 12628587 12675368
Inversion Chr1 13979864 14777277 OsKitaake01g167200
Inversion Chr1 13979876 14777286 OsKitaake01g167200
Inversion Chr1 36662705 36912688 OsKitaake01g393100
Inversion Chr1 36805142 36912688 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2057418 Chr6 30680818 2
Translocation Chr8 2057420 Chr6 30680328 2
Translocation Chr9 6970207 Chr1 6990310
Translocation Chr10 8627703 Chr5 15033389

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11781704	C-T	Hetero	INTERGENIC
SBS	Chr1	13130461	C-T	Hetero	INTERGENIC
SBS	Chr1	14425914	C-A	Hetero	INTERGENIC
SBS	Chr1	23518882	T-C	Homo	INTERGENIC
SBS	Chr1	32117323	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g323600
SBS	Chr1	36148596	T-C	Hetero	INTERGENIC
SBS	Chr1	36148773	T-A	Hetero	INTERGENIC
SBS	Chr2	29137106	A-C	Homo	INTERGENIC
SBS	Chr3	908010	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	1855948	C-G	Hetero	UTR_5_PRIME
SBS	Chr3	19755630	T-A	Hetero	INTERGENIC
SBS	Chr3	26573003	C-T	Hetero	INTERGENIC
SBS	Chr3	32616361	A-G	Hetero	INTRON
SBS	Chr3	34904982	T-A	Homo	INTERGENIC
SBS	Chr3	35644584	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g391300
SBS	Chr4	17667782	C-T	Homo	INTERGENIC
SBS	Chr4	28145486	G-C	Hetero	INTERGENIC
SBS	Chr4	34748867	C-T	Hetero	INTERGENIC
SBS	Chr4	34939242	T-C	Homo	INTERGENIC
SBS	Chr5	895811	G-A	Hetero	INTERGENIC
SBS	Chr5	895812	G-A	Hetero	INTERGENIC
SBS	Chr5	1395073	A-G	Homo	INTERGENIC
SBS	Chr5	3537880	C-T	Hetero	INTERGENIC
SBS	Chr6	2380420	C-A	Hetero	INTERGENIC
SBS	Chr6	5739051	G-A	Homo	INTERGENIC
SBS	Chr6	21543298	C-T	Hetero	INTERGENIC
SBS	Chr6	21835938	G-A	Hetero	INTERGENIC
SBS	Chr6	23625471	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	30681111	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	11301897	C-T	Hetero	INTERGENIC
SBS	Chr7	22288022	C-A	Hetero	INTERGENIC
SBS	Chr7	22406973	C-G	Homo	INTERGENIC
SBS	Chr8	1330020	G-A	Hetero	INTERGENIC
SBS	Chr8	2057882	T-C	Hetero	INTERGENIC
SBS	Chr8	4353286	A-T	Hetero	INTERGENIC
SBS	Chr8	20644049	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	28621364	T-C	Hetero	INTERGENIC
SBS	Chr9	6685489	C-T	Hetero	INTERGENIC
SBS	Chr10	14602746	A-G	Hetero	INTERGENIC
SBS	Chr11	16287065	G-C	Hetero	INTERGENIC
SBS	Chr11	21493639	G-T	Hetero	INTERGENIC
SBS	Chr12	8555315	G-A	Hetero	INTERGENIC
SBS	Chr12	10235484	C-A	Hetero	INTERGENIC
SBS	Chr12	13303749	G-A	Hetero	INTERGENIC
SBS	Chr12	13502263	T-C	Hetero	INTERGENIC
SBS	Chr12	17590238	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1520423	1520424	1
Deletion	Chr11	5408225	5408226	1
Deletion	Chr1	6988001	7009000	20999	2
Deletion	Chr4	9777594	9777600	6
Deletion	Chr4	10396607	10396608	1	OsKitaake04g055500
Deletion	Chr3	11380872	11380873	1
Deletion	Chr4	12420556	12420568	12
Deletion	Chr6	13907491	13907503	12
Deletion	Chr9	14630001	14740000	109999	12
Deletion	Chr9	14746001	15053000	306999	31
Deletion	Chr4	14795636	14795645	9
Deletion	Chr7	17524091	17524102	11
Deletion	Chr7	25406639	25406645	6
Deletion	Chr1	25693350	25693361	11
Deletion	Chr2	26902542	26902549	7
Deletion	Chr12	26910186	26910198	12	OsKitaake12g225100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	12628579	12675366
Inversion	Chr10	12628587	12675368
Inversion	Chr1	13979864	14777277	OsKitaake01g167200
Inversion	Chr1	13979876	14777286	OsKitaake01g167200
Inversion	Chr1	36662705	36912688	OsKitaake01g393100
Inversion	Chr1	36805142	36912688	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes